View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0119-INSERTION-9 (Length: 896)
Name: NF0119-INSERTION-9
Description: NF0119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0119-INSERTION-9 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 538; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 246 - 896
Target Start/End: Original strand, 1325369 - 1326037
Alignment:
| Q |
246 |
aattgtcatggtcctaattcctaacttactctattatatttcattctctagtattgtccacaaagcnnnnnnnncttcttcaagaagtttaatgcttctg |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1325369 |
aattgtcatggtcctaattcctaacttactctattatatttcattctctagtattgtccacaaagcttttttt-cttcttcaagaagtttaatgcttctc |
1325467 |
T |
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| Q |
346 |
cattaactgttacatgtaggcaaatggacctgcatatcaagttccaacagggaggagagatggatttgtttcagataaatctcttgcaggtaatatgccg |
445 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1325468 |
cattaactgttacatgtaggcaaatggacctgcatatcaagttccaacagggaggagagatggatttgtttcagataaatctcttgcaggtaatatgccg |
1325567 |
T |
|
| Q |
446 |
gatgttaatgattcaattcagcaactcaagaccaagttcctaaacaagggtctcacagaaaaagaccttgttcttctcagtggtacactctctatctctc |
545 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1325568 |
gatgttaatgattcaattcagcaactcaagaccaagttcctaaacaagggtctcacagaaaaagaccttgttcttctcagtggtacactctctatctctc |
1325667 |
T |
|
| Q |
546 |
ttttacactataaaacacag-----acatgatacacgtcgatactggtaataattttaaaaaatgaattaaacaaacataatcctatatgtcgatg---- |
636 |
Q |
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| T |
1325668 |
tcttacactataaaacacagacacaacatgatccacgtcgatactgataataattttaaaaaatgaattaaacaaacataatcctatatgtcgatgtcag |
1325767 |
T |
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| Q |
637 |
----------cgtgtcagacacgtaacacgccttcaattagaaatgtctatttcagtgcttctagacaacacatgcatattacatgcagagtaaatgaga |
726 |
Q |
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| T |
1325768 |
acacgtaacatgtgtcagacactaaacacgccttcaattagaaatgtctgtttcagtgcttcaagacaacacatgcatattacatgcagagtaaatgaga |
1325867 |
T |
|
| Q |
727 |
tcatggttgttgaagtggcaaagtaatatgaactagaacaggggaaaaacaaaataaataatcacaacaagacattggccataccaactacatgatttac |
826 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1325868 |
tcatggttgttgaagtggcaaagtaatatgaactagaacaggggaaaaacaaaataaataatcacaacaagacattggccataccaactacatgatttac |
1325967 |
T |
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| Q |
827 |
tcaatttgggaaattgatagagaagggttactgtatattaattaaatattatgatataggattataatat |
896 |
Q |
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| T |
1325968 |
tcaatttgggaaattgatagagaagggttactgtatattaattaaatattatgatataggattataatat |
1326037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 1326033 - 1326275
Alignment:
| Q |
8 |
aatattccaaccaatcacttttttaagattttgtcaatttttcaggattc-aagaaatgttgacacaatatctaccactctttgtttaatgagcctgtta |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1326033 |
aatattccaaccaatcacttttttaagattttgtcaatttttcaggattctaagaaatgttgacacaatatctaccactctttgtttaatgagcctgtta |
1326132 |
T |
|
| Q |
107 |
ctggcccaattaaataaaacaaagagatcttgggtctctaggattatgttttcgcaccttctttttccatcctattgagtttctcgcgcgttttttgtaa |
206 |
Q |
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||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1326133 |
ctggcccaattaaataaaacaaaaagatctcggatctctaggattatgttttcgcaccttctttttccgtcctattgagtttctcgcgcgttttttgtaa |
1326232 |
T |
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| Q |
207 |
tttggattataaaattagaacggcataaatactctataaaatt |
249 |
Q |
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| T |
1326233 |
tttggattataaaattagaacggcataaacactctataaaatt |
1326275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 807 - 896
Target Start/End: Original strand, 1322396 - 1322486
Alignment:
| Q |
807 |
ataccaactacatgatttactcaatttgggaaattgatagag-aagggttactgtatattaattaaatattatgatataggattataatat |
896 |
Q |
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| T |
1322396 |
ataccaactacatgatttactcaatttgggaaattgattgcgaaaggattactgtgaattaattaaatattatgatataatattataatat |
1322486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 1322482 - 1322560
Alignment:
| Q |
8 |
aatattccaaccaatcacttt-tttaagattttgtcaatttttcaggattcaagaaatgttgacacaatatctaccact |
85 |
Q |
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|||||| |||| |||||| || |||||||||||| ||| ||||||||||||||| |||||||||| || |||||||||| |
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| T |
1322482 |
aatatttcaacaaatcacgttatttaagattttgacaaattttcaggattcaagtaatgttgacataaaatctaccact |
1322560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 247
Target Start/End: Original strand, 28503196 - 28503277
Alignment:
| Q |
165 |
ttctttttccatcctattgagtttctcgcgcgttttttgtaatttggattataaaattagaacggcataaatactctataaaa |
247 |
Q |
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||||||||||||||||| |||||| || ||||| | || | |||||||||||||||| ||||||||||||||||| |||||| |
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| T |
28503196 |
ttctttttccatcctat-gagtttttcacgcgtcctatgcagtttggattataaaattcgaacggcataaatactccataaaa |
28503277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 248
Target Start/End: Original strand, 15322216 - 15322299
Alignment:
| Q |
165 |
ttctttttccatcctattgagtttctcgcgcgttttttgtaatttggattataaaattagaacggcataaatactctataaaat |
248 |
Q |
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|||||||||| || ||||| |||||||||| | || ||||||||||||||||||||| |||| |||||| ||| |||||||| |
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| T |
15322216 |
ttctttttccgtcttattgcgtttctcgcgtgcattatgtaatttggattataaaattcaaacgacataaacactttataaaat |
15322299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 573 - 610
Target Start/End: Original strand, 21768599 - 21768636
Alignment:
| Q |
573 |
acacgtcgatactggtaataattttaaaaaatgaatta |
610 |
Q |
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|||||||||||||||||||||||| | ||||||||||| |
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| T |
21768599 |
acacgtcgatactggtaataatttgagaaaatgaatta |
21768636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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