View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0119_high_2 (Length: 326)
Name: NF0119_high_2
Description: NF0119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0119_high_2 |
 | |
|
| [»] scaffold0196 (1 HSPs) |
| | |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 25110722 - 25110406
Alignment:
| Q |
1 |
gtttctctagcaatattggtatgttttctatctttgaagcggaaattttgggcctccttctggccatagaatatgcggtcatcaacaggtggtctcatgt |
100 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
25110722 |
gtttcgctagcaatattggtatggtttctatctttgaagcggaaattttgggcctcctactggccatagaatatgcggtcatcaacatgtggtctcattt |
25110623 |
T |
|
| Q |
101 |
atggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaact |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||| | |
|
|
| T |
25110622 |
atggcttgaaagtgattctattagtgcggttcaagccttccataaaccatctcttattcctatttgtcttcggaagaggtggcataattgctctcaaaat |
25110523 |
T |
|
| Q |
201 |
aatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggtcatgatgttcacgacacggtttggttca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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|
| T |
25110522 |
aatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggacatgatgttcaagacacggtttggttca |
25110423 |
T |
|
| Q |
301 |
cgttgttgccttcatct |
317 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
25110422 |
cgttgttgccttcatct |
25110406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 25169814 - 25169498
Alignment:
| Q |
1 |
gtttctctagcaatattggtatgttttctatctttgaagcggaaattttgggcctccttctggccatagaatatgcggtcatcaacaggtggtctcatgt |
100 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
25169814 |
gtttcgctagcaatattggtatggtttctatctttgaagcggaaattttgggcctcctactggccatagaatatgcggtcatcaacatgtggtctcattt |
25169715 |
T |
|
| Q |
101 |
atggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaact |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||| | |
|
|
| T |
25169714 |
atggcttgaaagtgattctattagtgcggttcaagccttccataaaccatctcttattcctatttgtcttcggaagaggtggcataattgctctcaaaat |
25169615 |
T |
|
| Q |
201 |
aatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggtcatgatgttcacgacacggtttggttca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
25169614 |
aatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggacatgatgttcaagacacggtttggttca |
25169515 |
T |
|
| Q |
301 |
cgttgttgccttcatct |
317 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
25169514 |
cgttgttgccttcatct |
25169498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 106 - 278
Target Start/End: Complemental strand, 33852419 - 33852247
Alignment:
| Q |
106 |
ttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaactaattt |
205 |
Q |
| |
|
|||||| ||||||| | |||| ||||| || ||||||||||||||||||||||||||| ||||||| ||| |||||| || ||| |||| | | || |
|
|
| T |
33852419 |
ttgaaagtgattcttcttgtgcagttcaagctttccataaaccatctcttattcctatttgtcttcggaacgagtggcacaactgcactcataatggctt |
33852320 |
T |
|
| Q |
206 |
gtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggtcatgat |
278 |
Q |
| |
|
|||| | ||||| || || |||||||| ||||| ||||||||| |||| | ||||| |||||||| |||||| |
|
|
| T |
33852319 |
gtttatgatttgttctcacatcttccgagaagggaatgtttgtactgacgaccttgtagctttgggacatgat |
33852247 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 121; Significance: 6e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 149 - 317
Target Start/End: Complemental strand, 4790580 - 4790412
Alignment:
| Q |
149 |
atctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaactaatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgt |
248 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4790580 |
atctcttattcctattcttcttcggaacaggtggcataactgttctcaaaaaaatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgt |
4790481 |
T |
|
| Q |
249 |
gctgatggccttgctgctttgggtcatgatgttcacgacacggtttggttcacgttgttgccttcatct |
317 |
Q |
| |
|
| ||||||| |||| |||||||| |||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4790480 |
gttgatggcgttgcagctttgggacatgatattcaagacacggtttggttcacgttgttgccttcatct |
4790412 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 100 - 280
Target Start/End: Complemental strand, 31671 - 31491
Alignment:
| Q |
100 |
tatggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaac |
199 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||| || ||||||||||||||||||||||| || ||||||||||| | ||||||||||| |||| | |
|
|
| T |
31671 |
tatggcttgaaagtgattcttctagtgcggttcaagctttccataaaccatctcttattccggttagtcttcgcaaccgttggcataattgtactcacaa |
31572 |
T |
|
| Q |
200 |
taatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggtcatgatgt |
280 |
Q |
| |
|
| | ||| | |||||||| || |||||||| ||||| |||||||| || |||||||| || |||||||| |||||||| |
|
|
| T |
31571 |
gggtctctttattatttgctcccacatcttccgagaaggcaatgtttgcgcggatggcctcgccgctttgggacatgatgt |
31491 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 100 - 280
Target Start/End: Complemental strand, 10988353 - 10988173
Alignment:
| Q |
100 |
tatggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaac |
199 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||| || ||||||||||||||||||||||| || ||||||||||| | ||||||||||| |||| | |
|
|
| T |
10988353 |
tatggcttgaaagtgattcttctagtgcggttcaagctttccataaaccatctcttattccggttagtcttcgcaaccgttggcataattgtactcacaa |
10988254 |
T |
|
| Q |
200 |
taatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggtcatgatgt |
280 |
Q |
| |
|
| | ||| | |||||||| || |||||||| ||||| |||||||| || |||||||| || |||||||| |||||||| |
|
|
| T |
10988253 |
gggtctctttattatttgctcccacatcttccgagaaggcaatgtttgcgcggatggcctcgccgctttgggacatgatgt |
10988173 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 90 - 316
Target Start/End: Original strand, 21355025 - 21355251
Alignment:
| Q |
90 |
tggtctcatgtatggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaacaggtggcataatt |
189 |
Q |
| |
|
||||||||| |||||||||||| || ||| |||||||||||| || |||||||||||||||||||||||| || ||||||| ||| | || || || | |
|
|
| T |
21355025 |
tggtctcatttatggcttgaaagcgactcttctagtgcggttcaggctttccataaaccatctcttattcctgtttgtcttcggaaccgatgacacaact |
21355124 |
T |
|
| Q |
190 |
gctctcaaactaatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggtcatgatgttcacgacac |
289 |
Q |
| |
|
| | || | |||| ||||||||||||| || ||||| ||||| |||||||||| |||||| |||| ||||| || |||| | ||| |||| | ||| |
|
|
| T |
21355125 |
gtacacataataatctgtttctcatttgttctcatatattccggaaaggaaatgtctgtgcttatggacttgcagccatggggcgcgatattcaaggcac |
21355224 |
T |
|
| Q |
290 |
ggtttggttcacgttgttgccttcatc |
316 |
Q |
| |
|
||| |||||||| ||||||||| |||| |
|
|
| T |
21355225 |
ggtctggttcactttgttgcctccatc |
21355251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 100 - 280
Target Start/End: Complemental strand, 198835 - 198655
Alignment:
| Q |
100 |
tatggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaac |
199 |
Q |
| |
|
|||||||||||| ||||||| ||||||||| || || |||||| |||||||||||||||| || ||||||||||| | ||||||||||| |||| | |
|
|
| T |
198835 |
tatggcttgaaagtgattcttctagtgcggtacaagctttccatcaaccatctcttattccggttggtcttcgcaaccgttggcataattgtactcacaa |
198736 |
T |
|
| Q |
200 |
taatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggtcatgatgt |
280 |
Q |
| |
|
| | | ||| | |||||||| || |||||||| ||||| ||| || | || |||||||| || |||||||| |||||||| |
|
|
| T |
198735 |
tggtctctttattatttgctcccacatcttccgagaaggcaatattagcgcggatggcctcgccgctttgggacatgatgt |
198655 |
T |
|
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Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 100 - 280
Target Start/End: Complemental strand, 21407681 - 21407501
Alignment:
| Q |
100 |
tatggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaac |
199 |
Q |
| |
|
|||||||||||| ||||||| ||||||||| || || |||||||||| |||||||||||| || ||||||||||| | ||||||||||| |||| | |
|
|
| T |
21407681 |
tatggcttgaaagtgattcttctagtgcggtacaagctttccataaacaatctcttattccggttggtcttcgcaaccgttggcataattgtactcacaa |
21407582 |
T |
|
| Q |
200 |
taatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggtcatgatgt |
280 |
Q |
| |
|
| | | ||| | |||||||| || |||||| | ||||| |||||||| || |||||||| || ||||||| |||||||| |
|
|
| T |
21407581 |
tggtctctttattatttgctcccacatcttcagagaagggaatgtttgcgcggatggcctcgccactttgggacatgatgt |
21407501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 100 - 280
Target Start/End: Complemental strand, 21802173 - 21801993
Alignment:
| Q |
100 |
tatggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaac |
199 |
Q |
| |
|
|||||||||||| ||||||| ||||||||| || || |||||||||| |||||||||||| || ||||||||||| | ||||||||||| |||| | |
|
|
| T |
21802173 |
tatggcttgaaagtgattcttctagtgcggtacaagctttccataaacaatctcttattccggttggtcttcgcaaccgttggcataattgtactcacaa |
21802074 |
T |
|
| Q |
200 |
taatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggtcatgatgt |
280 |
Q |
| |
|
| | | ||| | |||||||| || |||||| | ||||| |||||||| || |||||||| || ||||||| |||||||| |
|
|
| T |
21802073 |
tggtctctttattatttgctcccacatcttcagagaagggaatgtttgcgcggatggcctcgccactttgggacatgatgt |
21801993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 280
Target Start/End: Original strand, 27916395 - 27916573
Alignment:
| Q |
102 |
tggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaacta |
201 |
Q |
| |
|
|||||||||| |||||| ||||||||| || || |||||||||||||||||||||| || ||||||||||| | ||||||||||| |||| | | |
|
|
| T |
27916395 |
tggcttgaaagcgattcttctagtgcggtacaagctttccataaaccatctcttattcaggttggtcttcgcaaccgttggcataattgtactcacaatg |
27916494 |
T |
|
| Q |
202 |
atttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggtcatgatgt |
280 |
Q |
| |
|
| | ||| | ||||||| || ||||||| ||||| |||||||| || |||||||| || |||||||| |||||||| |
|
|
| T |
27916495 |
gtctctttattatttgcttccacgtcttccgagaaggcaatgtttgcgcggatggcctcgccgctttgggacatgatgt |
27916573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 280
Target Start/End: Original strand, 27962814 - 27962992
Alignment:
| Q |
102 |
tggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaacta |
201 |
Q |
| |
|
|||||||||| |||||| ||||||||| || || |||||||||||||||||||||| || ||||||||||| | ||||||||||| |||| | | |
|
|
| T |
27962814 |
tggcttgaaagcgattcttctagtgcggtacaagctttccataaaccatctcttattctggttggtcttcgcaaccgttggcataattgtactcacaatg |
27962913 |
T |
|
| Q |
202 |
atttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggtcatgatgt |
280 |
Q |
| |
|
| | ||| | ||||||| || ||||||| ||||| |||||||| || |||||||| || |||||||| |||||||| |
|
|
| T |
27962914 |
gtctctttattatttgcttccacgtcttccgagaaggcaatgtttgcgcggatggcctcgccgctttgggacatgatgt |
27962992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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