View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0119_high_6 (Length: 252)
Name: NF0119_high_6
Description: NF0119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0119_high_6 |
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| [»] scaffold0196 (1 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 25110783 - 25110551
Alignment:
| Q |
1 |
aggcatttgatggccgcttgcggtggtatttttcgagattcacggggaactattttaggtggtttctctagcaatattggtatggtttctatctttgaag |
100 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
25110783 |
aggcatttgatggctacttgcggtggtattttttgagattcacggggaacttttttaggtggtttcgctagcaatattggtatggtttctatctttgaag |
25110684 |
T |
|
| Q |
101 |
cggaaattttgggcctccttctggccatagaatatgcggtcatcaacaggtggtctcatgtatggcttgaaactgattctattagtgcggttcacgcctt |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||| ||||| |
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| T |
25110683 |
cggaaattttgggcctcctactggccatagaatatgcggtcatcaacatgtggtctcatttatggcttgaaagtgattctattagtgcggttcaagcctt |
25110584 |
T |
|
| Q |
201 |
ccataaaccatctcttattcctattcgtcttcg |
233 |
Q |
| |
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||||||||||||||||||||||||| ||||||| |
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| T |
25110583 |
ccataaaccatctcttattcctatttgtcttcg |
25110551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 25169875 - 25169643
Alignment:
| Q |
1 |
aggcatttgatggccgcttgcggtggtatttttcgagattcacggggaactattttaggtggtttctctagcaatattggtatggtttctatctttgaag |
100 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
25169875 |
aggcatttgatggctacttgcggtggtattttttgagattcacggggaacttttttaggtggtttcgctagcaatattggtatggtttctatctttgaag |
25169776 |
T |
|
| Q |
101 |
cggaaattttgggcctccttctggccatagaatatgcggtcatcaacaggtggtctcatgtatggcttgaaactgattctattagtgcggttcacgcctt |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||| ||||| |
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| T |
25169775 |
cggaaattttgggcctcctactggccatagaatatgcggtcatcaacatgtggtctcatttatggcttgaaagtgattctattagtgcggttcaagcctt |
25169676 |
T |
|
| Q |
201 |
ccataaaccatctcttattcctattcgtcttcg |
233 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
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| T |
25169675 |
ccataaaccatctcttattcctatttgtcttcg |
25169643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 233
Target Start/End: Complemental strand, 33852419 - 33852353
Alignment:
| Q |
167 |
ttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcg |
233 |
Q |
| |
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|||||| ||||||| | |||| ||||| || ||||||||||||||||||||||||||| ||||||| |
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|
| T |
33852419 |
ttgaaagtgattcttcttgtgcagttcaagctttccataaaccatctcttattcctatttgtcttcg |
33852353 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 233
Target Start/End: Original strand, 21354886 - 21355107
Alignment:
| Q |
16 |
gcttgcggtggtatttttcgagattcacggggaactattttaggtggtttctctagcaatattggtatggtttctatctttgaagcggaaattttgggcc |
115 |
Q |
| |
|
|||||||||||| ||||||| || || | |||||| || | |||||||| |||| || |||||| |||||||||||| |||| ||||||||||| | |
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| T |
21354886 |
gcttgcggtggtctttttcgtgactctcatggaacttttcttggtggttttgctagtaacattggttcggtttctatcttcaaagcagaaattttgggac |
21354985 |
T |
|
| Q |
116 |
tccttctggccatagaatatgcggtcatcaac-----aggtggtctcatgtatggcttgaaactgattctattagtgcggttcacgccttccataaacca |
210 |
Q |
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|| | ||| ||||||||||||| |||||| || ||||||||| |||||||||||| || ||| |||||||||||| || |||||||||||| |
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| T |
21354986 |
tcataatggttatagaatatgcgg-catcaaacagctagctggtctcatttatggcttgaaagcgactcttctagtgcggttcaggctttccataaacca |
21355084 |
T |
|
| Q |
211 |
tctcttattcctattcgtcttcg |
233 |
Q |
| |
|
|||||||||||| || ||||||| |
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| T |
21355085 |
tctcttattcctgtttgtcttcg |
21355107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 31671 - 31595
Alignment:
| Q |
161 |
tatggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaac |
237 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||| || ||||||||||||||||||||||| || ||||||||||| |
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| T |
31671 |
tatggcttgaaagtgattcttctagtgcggttcaagctttccataaaccatctcttattccggttagtcttcgcaac |
31595 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 10988353 - 10988277
Alignment:
| Q |
161 |
tatggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaac |
237 |
Q |
| |
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|||||||||||| ||||||| |||||||||||| || ||||||||||||||||||||||| || ||||||||||| |
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| T |
10988353 |
tatggcttgaaagtgattcttctagtgcggttcaagctttccataaaccatctcttattccggttagtcttcgcaac |
10988277 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 198835 - 198759
Alignment:
| Q |
161 |
tatggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaac |
237 |
Q |
| |
|
|||||||||||| ||||||| ||||||||| || || |||||| |||||||||||||||| || ||||||||||| |
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| T |
198835 |
tatggcttgaaagtgattcttctagtgcggtacaagctttccatcaaccatctcttattccggttggtcttcgcaac |
198759 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 21407681 - 21407605
Alignment:
| Q |
161 |
tatggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaac |
237 |
Q |
| |
|
|||||||||||| ||||||| ||||||||| || || |||||||||| |||||||||||| || ||||||||||| |
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|
| T |
21407681 |
tatggcttgaaagtgattcttctagtgcggtacaagctttccataaacaatctcttattccggttggtcttcgcaac |
21407605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 21802173 - 21802097
Alignment:
| Q |
161 |
tatggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaac |
237 |
Q |
| |
|
|||||||||||| ||||||| ||||||||| || || |||||||||| |||||||||||| || ||||||||||| |
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|
| T |
21802173 |
tatggcttgaaagtgattcttctagtgcggtacaagctttccataaacaatctcttattccggttggtcttcgcaac |
21802097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 237
Target Start/End: Original strand, 27916395 - 27916469
Alignment:
| Q |
163 |
tggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaac |
237 |
Q |
| |
|
|||||||||| |||||| ||||||||| || || |||||||||||||||||||||| || ||||||||||| |
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|
| T |
27916395 |
tggcttgaaagcgattcttctagtgcggtacaagctttccataaaccatctcttattcaggttggtcttcgcaac |
27916469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 237
Target Start/End: Original strand, 27962814 - 27962888
Alignment:
| Q |
163 |
tggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaac |
237 |
Q |
| |
|
|||||||||| |||||| ||||||||| || || |||||||||||||||||||||| || ||||||||||| |
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|
| T |
27962814 |
tggcttgaaagcgattcttctagtgcggtacaagctttccataaaccatctcttattctggttggtcttcgcaac |
27962888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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