View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0119_high_7 (Length: 213)
Name: NF0119_high_7
Description: NF0119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0119_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 19 - 162
Target Start/End: Complemental strand, 1326038 - 1325895
Alignment:
| Q |
19 |
aatattataatcctatatcataatatttaattaatatacagtaacccttctctatcaatttcccaaattgagtaaatcatgtagttggtatggccaatgt |
118 |
Q |
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| T |
1326038 |
aatattataatcctatatcataatatttaattaatatacagtaacccttctctatcaatttcccaaattgagtaaatcatgtagttggtatggccaatgt |
1325939 |
T |
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| Q |
119 |
cttgttgtgattatttattttgtttttcccctgttctagttcat |
162 |
Q |
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| T |
1325938 |
cttgttgtgattatttattttgtttttcccctgttctagttcat |
1325895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 1322487 - 1322396
Alignment:
| Q |
19 |
aatattataatcctatatcataatatttaattaatatacagtaaccctt-ctctatcaatttcccaaattgagtaaatcatgtagttggtat |
109 |
Q |
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||||||||||| |||||||||||||||||||||| ||||||| |||| | | |||||||||||||||||||||||||||||||||||||| |
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| T |
1322487 |
aatattataatattatatcataatatttaattaattcacagtaatcctttcgcaatcaatttcccaaattgagtaaatcatgtagttggtat |
1322396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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