View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0120-INSERTION-1 (Length: 761)

Name: NF0120-INSERTION-1
Description: NF0120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0120-INSERTION-1
NF0120-INSERTION-1
[»] chr2 (10 HSPs)
chr2 (251-739)||(26411410-26411894)
chr2 (9-213)||(26411932-26412136)
chr2 (682-739)||(13527320-13527377)
chr2 (672-736)||(34807371-34807435)
chr2 (667-739)||(4056583-4056655)
chr2 (672-739)||(13350677-13350744)
chr2 (693-736)||(24020577-24020620)
chr2 (644-739)||(38843490-38843584)
chr2 (682-739)||(2265554-2265611)
chr2 (682-739)||(17263161-17263218)
[»] chr5 (8 HSPs)
chr5 (672-739)||(11100028-11100095)
chr5 (648-731)||(5522082-5522165)
chr5 (672-739)||(6350215-6350282)
chr5 (682-737)||(31408761-31408816)
chr5 (682-736)||(16475376-16475430)
chr5 (684-736)||(13947529-13947581)
chr5 (672-739)||(22653378-22653445)
chr5 (682-739)||(12713988-12714045)
[»] chr4 (22 HSPs)
chr4 (672-739)||(4464844-4464911)
chr4 (647-727)||(15015277-15015357)
chr4 (672-739)||(17716363-17716430)
chr4 (683-736)||(21633217-21633270)
chr4 (672-737)||(22431478-22431543)
chr4 (682-739)||(25198719-25198776)
chr4 (667-724)||(30622743-30622799)
chr4 (645-726)||(50503200-50503281)
chr4 (667-739)||(30365470-30365542)
chr4 (684-736)||(36197525-36197577)
chr4 (672-739)||(4390876-4390943)
chr4 (672-739)||(11051041-11051108)
chr4 (672-735)||(20148172-20148235)
chr4 (676-739)||(31435683-31435746)
chr4 (676-727)||(44433223-44433274)
chr4 (682-736)||(37970991-37971045)
chr4 (677-739)||(52714186-52714248)
chr4 (682-739)||(7707074-7707131)
chr4 (682-739)||(28307873-28307930)
chr4 (672-737)||(29061008-29061073)
chr4 (682-739)||(45780173-45780230)
chr4 (682-739)||(46895948-46896005)
[»] chr1 (20 HSPs)
chr1 (648-739)||(3391744-3391835)
chr1 (682-739)||(26844430-26844487)
chr1 (626-739)||(28867854-28867967)
chr1 (651-739)||(26063474-26063562)
chr1 (672-739)||(34319230-34319297)
chr1 (672-739)||(49239381-49239448)
chr1 (667-724)||(38596765-38596822)
chr1 (695-739)||(15732576-15732620)
chr1 (676-739)||(13120988-13121051)
chr1 (676-739)||(33525205-33525268)
chr1 (682-736)||(34320083-34320137)
chr1 (682-739)||(1507130-1507187)
chr1 (682-739)||(2022718-2022775)
chr1 (682-739)||(17047412-17047469)
chr1 (682-739)||(17499275-17499332)
chr1 (682-739)||(25602640-25602697)
chr1 (682-739)||(27658727-27658784)
chr1 (682-739)||(33561306-33561363)
chr1 (682-739)||(39827273-39827330)
chr1 (627-664)||(52702370-52702407)
[»] chr6 (5 HSPs)
chr6 (645-739)||(5300962-5301056)
chr6 (648-731)||(3107269-3107352)
chr6 (683-736)||(22756932-22756985)
chr6 (682-739)||(559017-559074)
chr6 (672-737)||(34440378-34440443)
[»] chr8 (7 HSPs)
chr8 (684-737)||(18531692-18531745)
chr8 (685-739)||(31523170-31523224)
chr8 (672-739)||(2731272-2731339)
chr8 (701-739)||(14172376-14172414)
chr8 (649-715)||(40046269-40046335)
chr8 (672-721)||(37296071-37296120)
chr8 (682-739)||(44826803-44826860)
[»] scaffold0041 (1 HSPs)
scaffold0041 (672-739)||(72149-72216)
[»] scaffold0016 (1 HSPs)
scaffold0016 (672-735)||(84969-85032)
[»] chr7 (7 HSPs)
chr7 (672-739)||(40894068-40894135)
chr7 (676-739)||(17845243-17845306)
chr7 (672-739)||(23030516-23030583)
chr7 (672-739)||(35001572-35001639)
chr7 (682-739)||(9488074-9488131)
chr7 (644-737)||(24171492-24171585)
chr7 (682-739)||(31511959-31512016)
[»] chr3 (8 HSPs)
chr3 (668-739)||(2812667-2812738)
chr3 (672-739)||(32025642-32025709)
chr3 (682-739)||(44748245-44748302)
chr3 (672-739)||(20451127-20451194)
chr3 (672-739)||(42218297-42218364)
chr3 (667-737)||(52594729-52594799)
chr3 (682-739)||(35500285-35500342)
chr3 (682-739)||(44846300-44846357)
[»] scaffold0173 (1 HSPs)
scaffold0173 (684-739)||(22301-22356)
[»] scaffold0031 (1 HSPs)
scaffold0031 (682-737)||(129596-129651)


Alignment Details
Target: chr2 (Bit Score: 431; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 251 - 739
Target Start/End: Complemental strand, 26411894 - 26411410
Alignment:
Q  251 tactcctatgtcctaacttttcttttctataaataaaaggtgtggacgagtttggtctcggagctcactagagtgaggaaaggcttcgaggctcaatgag 350  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26411894 tactcctatgtcccaacttttcttttctataaataaaaggtgtggacgagtttggtctcggagctcactagagtgaggaaaagcttcgaggctcaatgag 26411795  T
Q  351 ctctaacgaaattacctacatattcctcacaaatgaggttctcatgtaagtaacggaattcgaactcaagttgttgtacaatttgagctgaatccttatc 450  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26411794 ctctaacgaagttacctacatattcctcacaaatgaggttctcatgtaagtaacggaattcgaactcaagttgttgtacaatttgagctgaatccttatc 26411695  T
Q  451 aaaccattgacatattctaaacttttcttgaaaagagtacttcttccctcataattttttattttgcagtaaatcagattattctcaacataccattcct 550  Q
    |||||||||||||||||||||||||||||||||||||||   |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  26411694 aaaccattgacatattctaaacttttcttgaaaagagta---cttccctcataa-ttttaattttgcagtaaatcagattattctcaacataccattcct 26411599  T
Q  551 cgaaagaatacttttcccagactattaatgaatattactgctcgaaagatattttaaggtaacttatcaaatataaggctttgtttggaaaaaatagctg 650  Q
    | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  26411598 caaaagaatacttttctcagactattaatgaatattactgctcgaaagatattttaagctaacttatcaaatgtaaggctttgtttggaaaaaatagctg 26411499  T
Q  651 atagcttatagccggagactaatgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  26411498 atagcttatagccggagactaatgacttatggctgataagtcaattgaagtgtttggtaaaattaccggttcaactaactaataaatgt 26411410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 9 - 213
Target Start/End: Complemental strand, 26412136 - 26411932
Alignment:
Q  9 ttaacactaactagttagataatccgtacagttaatcacacaaatctagttagattccttgatctgagaaacatgcagggcataataacaaatttccaat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26412136 ttaacactaactagttagataatccgtacagttaatcacacaaatctagttagattccttgatctgagaaacatgcagggcataataacaaatttccaat 26412037  T
Q  109 aaaagaaggcagagtaatcaaaccaacggcacaattaattaatcagtactgtttgttatggtgacaatcttcaacacaattgtgccgcaaagtgcaagac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26412036 aaaagaaggcagagtaatcaaaccaacggcacaattaattaatcagtactgttcgttatggtgacaatcttcaacacaattgtgccgcaaagtgcaagac 26411937  T
Q  209 aagta 213  Q
    |||||    
T  26411936 aagta 26411932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 682 - 739
Target Start/End: Original strand, 13527320 - 13527377
Alignment:
Q  682 gctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||||||||  |||||||||||||||||||| || ||||||||||| |||||||||||    
T  13527320 gctgataagctaattgaagtgtttggtaaaaatagcagttcaactagctaataaatgt 13527377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 672 - 736
Target Start/End: Complemental strand, 34807435 - 34807371
Alignment:
Q  672 atgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaa 736  Q
    |||||| || |||||||||  |||| |||||||||||||||||| | ||||||||||||||||||    
T  34807435 atgactgatagctgataagctaattaaagtgtttggtaaaattaacggttcaactaactaataaa 34807371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 667 - 739
Target Start/End: Complemental strand, 4056655 - 4056583
Alignment:
Q  667 gactaatgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||| ||||||||  |||||||||  |||| |||||||||||||||||| | |||||||| ||| ||||||||    
T  4056655 gactgatgacttacagctgataagctaattaaagtgtttggtaaaattaacggttcaactgactgataaatgt 4056583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 672 - 739
Target Start/End: Original strand, 13350677 - 13350744
Alignment:
Q  672 atgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||||| || |||||||||  || ||||||||||||||||| || | ||||||||| |||||||||||    
T  13350677 atgactgatagctgataagctaactgaagtgtttggtaaaaataacggttcaactagctaataaatgt 13350744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 693 - 736
Target Start/End: Complemental strand, 24020620 - 24020577
Alignment:
Q  693 aattgaagtgtttggtaaaattaccagttcaactaactaataaa 736  Q
    |||| |||||||||||||||||| | ||||||||||||||||||    
T  24020620 aattaaagtgtttggtaaaattagcggttcaactaactaataaa 24020577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 644 - 739
Target Start/End: Complemental strand, 38843584 - 38843490
Alignment:
Q  644 atagctgatagcttatagccggagactaatgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||| |||||||||||||| |  || |||||||| || ||| |||||  ||| ||||||||||||||||||| | ||||||||| || ||||||||    
T  38843584 atagttgatagcttatagctgatgattaatgactgatagcttataagctaat-gaagtgtttggtaaaattagcggttcaactagctgataaatgt 38843490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 739
Target Start/End: Original strand, 2265554 - 2265611
Alignment:
Q  682 gctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||||||||  |||||||||||||||||||| || | ||||||||| || ||||||||    
T  2265554 gctgataagctaattgaagtgtttggtaaaaatagcggttcaactagctgataaatgt 2265611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 739
Target Start/End: Original strand, 17263161 - 17263218
Alignment:
Q  682 gctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||||||||| || ||||||||||||||||| || | ||||||||| || ||||||||    
T  17263161 gctgataagttaactgaagtgtttggtaaaaatagcggttcaactagctgataaatgt 17263218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 672 - 739
Target Start/End: Original strand, 11100028 - 11100095
Alignment:
Q  672 atgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    ||||||||| |||||||||  ||||||||||||||||||||||| | |||||||||||| ||||||||    
T  11100028 atgacttatagctgataagctaattgaagtgtttggtaaaattagcggttcaactaactgataaatgt 11100095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 648 - 731
Target Start/End: Complemental strand, 5522165 - 5522082
Alignment:
Q  648 ctgatagcttatagccggagactaatgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaacta 731  Q
    ||||||| ||||||| |  |||| |||||| || | |||||||| ||||||||||||||||||||||| | | |||||||||||    
T  5522165 ctgatagtttatagctgatgactgatgactgatagttgataagttaattgaagtgtttggtaaaattagcggctcaactaacta 5522082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 672 - 739
Target Start/End: Complemental strand, 6350282 - 6350215
Alignment:
Q  672 atgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    ||||||||| |||||||||  |||| |||||||||||||||||| | ||||||||| || ||||||||    
T  6350282 atgacttatagctgataagctaattaaagtgtttggtaaaattagcggttcaactagctgataaatgt 6350215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 682 - 737
Target Start/End: Complemental strand, 31408816 - 31408761
Alignment:
Q  682 gctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaat 737  Q
    |||||||||  ||||||||| ||||||||||||| | |||||||||||||||||||    
T  31408816 gctgataagctaattgaagtatttggtaaaattaacggttcaactaactaataaat 31408761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 682 - 736
Target Start/End: Complemental strand, 16475430 - 16475376
Alignment:
Q  682 gctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaa 736  Q
    |||||||||  |||| |||||||||||||||||| | ||||||||||||||||||    
T  16475430 gctgataagctaattaaagtgtttggtaaaattagcggttcaactaactaataaa 16475376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 684 - 736
Target Start/End: Original strand, 13947529 - 13947581
Alignment:
Q  684 tgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaa 736  Q
    |||||||| |||||||||||||| |||||||| | |||||||||| |||||||    
T  13947529 tgataagttaattgaagtgtttgataaaattaacggttcaactaattaataaa 13947581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 672 - 739
Target Start/End: Complemental strand, 22653445 - 22653378
Alignment:
Q  672 atgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    ||||||||| | |||||||  | ||||||||||||||||||||| | ||||||||| || ||||||||    
T  22653445 atgacttatagttgataagctagttgaagtgtttggtaaaattagcggttcaactagctgataaatgt 22653378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 739
Target Start/End: Complemental strand, 12714045 - 12713988
Alignment:
Q  682 gctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||||||||| || ||||||||||||||||| || | ||||||||| || ||||||||    
T  12714045 gctgataagttaactgaagtgtttggtaaaaatagcggttcaactagctgataaatgt 12713988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 672 - 739
Target Start/End: Original strand, 4464844 - 4464911
Alignment:
Q  672 atgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    ||||||||| |||||||||  |||||||||||| |||||||||| | |||||||||||| ||||||||    
T  4464844 atgacttatagctgataagctaattgaagtgttcggtaaaattaacggttcaactaactgataaatgt 4464911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 647 - 727
Target Start/End: Complemental strand, 15015357 - 15015277
Alignment:
Q  647 gctgatagcttatagccggagactaatgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaacta 727  Q
    |||||||||||||||  || |||| ||||||  | |||||||||  ||||||||||||||||||||||| | |||||||||    
T  15015357 gctgatagcttataggtggtgactgatgactagtagctgataagctaattgaagtgtttggtaaaattagcggttcaacta 15015277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 672 - 739
Target Start/End: Complemental strand, 17716430 - 17716363
Alignment:
Q  672 atgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    ||||||||| |||||||||  | |||||||||||||||||||||   |||||||||||| ||||||||    
T  17716430 atgacttatagctgataagctagttgaagtgtttggtaaaattagtggttcaactaacttataaatgt 17716363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 683 - 736
Target Start/End: Original strand, 21633217 - 21633270
Alignment:
Q  683 ctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaa 736  Q
    ||||||||  |||| |||||||||||||||||| |||||||||||| |||||||    
T  21633217 ctgataagctaattaaagtgtttggtaaaattagcagttcaactaagtaataaa 21633270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 672 - 737
Target Start/End: Complemental strand, 22431543 - 22431478
Alignment:
Q  672 atgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaat 737  Q
    ||||||||| |||||||||  | |||||||||||||||||||||   |||||||||||| ||||||    
T  22431543 atgacttatagctgataagctagttgaagtgtttggtaaaattagtggttcaactaacttataaat 22431478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 682 - 739
Target Start/End: Original strand, 25198719 - 25198776
Alignment:
Q  682 gctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||||||||  || ||||||||||||||||| || |||||||||||||| ||||||||    
T  25198719 gctgataagctaactgaagtgtttggtaaaaataacagttcaactaactgataaatgt 25198776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 667 - 724
Target Start/End: Original strand, 30622743 - 30622799
Alignment:
Q  667 gactaatgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaa 724  Q
    |||| ||||||||| ||||||||| | |||||||||||||||||||||| ||||||||    
T  30622743 gactgatgacttatagctgataag-ctattgaagtgtttggtaaaattaacagttcaa 30622799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 645 - 726
Target Start/End: Complemental strand, 50503281 - 50503200
Alignment:
Q  645 tagctgatagcttatagccggagactaatgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaact 726  Q
    |||||||||||||||||| |  | || || ||| || |||||||||| |||| |||||||||||||||||| | ||||||||    
T  50503281 tagctgatagcttatagctgatggctgataactgatagctgataagttaatttaagtgtttggtaaaattaacggttcaact 50503200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 667 - 739
Target Start/End: Original strand, 30365470 - 30365542
Alignment:
Q  667 gactaatgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||||||||||||| |||||||||  | ||||| ||||||||||||||| | ||| |||| ||| ||||||||    
T  30365470 gactaatgacttatagctgataagctagttgaaatgtttggtaaaattagcggtttaactgacttataaatgt 30365542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 684 - 736
Target Start/End: Complemental strand, 36197577 - 36197525
Alignment:
Q  684 tgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaa 736  Q
    |||||||  |||| |||||||||||||||||| | ||||||||||||||||||    
T  36197577 tgataagctaattaaagtgtttggtaaaattaacggttcaactaactaataaa 36197525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 672 - 739
Target Start/End: Original strand, 4390876 - 4390943
Alignment:
Q  672 atgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    ||||||||| ||| |||||  ||||||||||||||||||||| | | ||||||||| || ||||||||    
T  4390876 atgacttatagcttataagctaattgaagtgtttggtaaaataagctgttcaactagctgataaatgt 4390943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 672 - 739
Target Start/End: Complemental strand, 11051108 - 11051041
Alignment:
Q  672 atgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    ||||||||| ||||||||   | ||||||||||||||||||||| | |||||||| ||| ||||||||    
T  11051108 atgacttatagctgataaactagttgaagtgtttggtaaaattagcggttcaactgacttataaatgt 11051041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 672 - 735
Target Start/End: Original strand, 20148172 - 20148235
Alignment:
Q  672 atgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataa 735  Q
    ||||||||| |||||||||  ||||||| ||||||||||||||| | |||||| ||||| ||||    
T  20148172 atgacttatagctgataagctaattgaactgtttggtaaaattatcggttcaattaacttataa 20148235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 676 - 739
Target Start/End: Complemental strand, 31435746 - 31435683
Alignment:
Q  676 cttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    ||||| |||||||||  | |||||| |||||||||||||| ||||||||||| || ||||||||    
T  31435746 cttatagctgataagctacttgaagcgtttggtaaaattaacagttcaactagctgataaatgt 31435683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 676 - 727
Target Start/End: Complemental strand, 44433274 - 44433223
Alignment:
Q  676 cttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaacta 727  Q
    ||||| |||||||||  ||||||||||||||||||||||| || ||||||||    
T  44433274 cttatagctgataagctaattgaagtgtttggtaaaattagcaattcaacta 44433223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 682 - 736
Target Start/End: Complemental strand, 37971045 - 37970991
Alignment:
Q  682 gctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaa 736  Q
    |||||||||  || |||||||||||||||||||| | |||||||||||| |||||    
T  37971045 gctgataagctaactgaagtgtttggtaaaattagcggttcaactaacttataaa 37970991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 677 - 739
Target Start/End: Complemental strand, 52714248 - 52714186
Alignment:
Q  677 ttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||| |||||||||| | |||||||||||||||||| || | ||||||||| || ||||||||    
T  52714248 ttatagctgataagttagttgaagtgtttggtaaaactagcggttcaactagctgataaatgt 52714186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 739
Target Start/End: Complemental strand, 7707131 - 7707074
Alignment:
Q  682 gctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||||||||  |||||||||||||||||||| || | ||||||||| || ||||||||    
T  7707131 gctgataagctaattgaagtgtttggtaaaaatagcggttcaactagctgataaatgt 7707074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 739
Target Start/End: Complemental strand, 28307930 - 28307873
Alignment:
Q  682 gctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||||||||| || ||||||||||||||||| || | ||||||||| || ||||||||    
T  28307930 gctgataagttaactgaagtgtttggtaaaaatagcggttcaactagctgataaatgt 28307873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 672 - 737
Target Start/End: Complemental strand, 29061073 - 29061008
Alignment:
Q  672 atgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaat 737  Q
    ||||||||| |||||||||  | ||||||||||||||||||||| | ||  |||||||| ||||||    
T  29061073 atgacttatagctgataagctagttgaagtgtttggtaaaattagcggtataactaacttataaat 29061008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 739
Target Start/End: Original strand, 45780173 - 45780230
Alignment:
Q  682 gctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||||||||  || ||||||||||||||||| || | |||||||||||| ||||||||    
T  45780173 gctgataagctaactgaagtgtttggtaaaaatagcggttcaactaactgataaatgt 45780230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 739
Target Start/End: Complemental strand, 46896005 - 46895948
Alignment:
Q  682 gctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||||||||  || ||||||||||||||||| || | ||||||||| |||||||||||    
T  46896005 gctgataagctaactgaagtgtttggtaaaaatagcggttcaactagctaataaatgt 46895948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 648 - 739
Target Start/End: Complemental strand, 3391835 - 3391744
Alignment:
Q  648 ctgatagcttatagccggagactaatgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    ||||||||||||||| |  || |||||||| || ||| |||||  ||||||||||||||||||||||| | ||||||||| || ||||||||    
T  3391835 ctgatagcttatagctgatgattaatgactgatagcttataagctaattgaagtgtttggtaaaattagcggttcaactagctgataaatgt 3391744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 682 - 739
Target Start/End: Complemental strand, 26844487 - 26844430
Alignment:
Q  682 gctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||||||||| || ||||||||||||||||| || |||||||||||||| ||||||||    
T  26844487 gctgataagttaactgaagtgtttggtaaaagtagcagttcaactaactgataaatgt 26844430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 626 - 739
Target Start/End: Original strand, 28867854 - 28867967
Alignment:
Q  626 aggctttgtttggaaaaaatagctgatagcttatagccggagactaatgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaac 725  Q
    ||||| ||||||| ||||||||| ||||||| ||||| |  || | || |||||| |||||||||| | |||||||||||||||||| || | ||||||     
T  28867854 aggctctgtttggtaaaaatagcggatagctgatagctgatgattgataacttatagctgataagttagttgaagtgtttggtaaaactagcggttcaat 28867953  T
Q  726 taactaataaatgt 739  Q
    || || ||||||||    
T  28867954 tagctgataaatgt 28867967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 651 - 739
Target Start/End: Original strand, 26063474 - 26063562
Alignment:
Q  651 atagcttatagccggagactaatgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||||||||||| |  |||| |||||| || ||| |||||| |||| ||||||||| |||||||| ||||||||||| || ||||||||    
T  26063474 atagcttatagctgatgactgatgactgatagcttataagttaattaaagtgtttgataaaattaacagttcaactagctgataaatgt 26063562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 672 - 739
Target Start/End: Complemental strand, 34319297 - 34319230
Alignment:
Q  672 atgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    ||||||||| |||||||||  | |||||||||||||||||||||   |||||||||||| ||||||||    
T  34319297 atgacttatagctgataagctagttgaagtgtttggtaaaattagtggttcaactaacttataaatgt 34319230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 672 - 739
Target Start/End: Original strand, 49239381 - 49239448
Alignment:
Q  672 atgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    ||||||||| |||||||||  | |||||||||||| |||||||| |||||||||| ||| ||||||||    
T  49239381 atgacttatagctgataagctagttgaagtgtttgataaaattagcagttcaactgacttataaatgt 49239448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 667 - 724
Target Start/End: Complemental strand, 38596822 - 38596765
Alignment:
Q  667 gactaatgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaa 724  Q
    |||| ||||||||| |||||||||  | ||||||||||||||||||||| ||||||||    
T  38596822 gactgatgacttatagctgataagctagttgaagtgtttggtaaaattagcagttcaa 38596765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 695 - 739
Target Start/End: Complemental strand, 15732620 - 15732576
Alignment:
Q  695 ttgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    ||||| ||||||||||||||| |||||||||||||| ||||||||    
T  15732620 ttgaaatgtttggtaaaattaacagttcaactaactgataaatgt 15732576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 676 - 739
Target Start/End: Original strand, 13120988 - 13121051
Alignment:
Q  676 cttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    ||||| |||||||||  || ||||||||||||||||| || ||||||||||| || ||||||||    
T  13120988 cttatagctgataagctaactgaagtgtttggtaaaaatagcagttcaactagctgataaatgt 13121051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 676 - 739
Target Start/End: Complemental strand, 33525268 - 33525205
Alignment:
Q  676 cttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    ||||| |||||||||| || ||||||||||||||||| || | ||||||||| || ||||||||    
T  33525268 cttatagctgataagttaactgaagtgtttggtaaaaatagcggttcaactagctgataaatgt 33525205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 682 - 736
Target Start/End: Complemental strand, 34320137 - 34320083
Alignment:
Q  682 gctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaa 736  Q
    |||||||||  || |||||||||||||||||||| ||||||||||| || |||||    
T  34320137 gctgataagctaactgaagtgtttggtaaaattagcagttcaactagcttataaa 34320083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 739
Target Start/End: Original strand, 1507130 - 1507187
Alignment:
Q  682 gctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||||||||  |||||||||||||||||||| || | ||||||||| || ||||||||    
T  1507130 gctgataagctaattgaagtgtttggtaaaaatagcggttcaactagctgataaatgt 1507187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 739
Target Start/End: Original strand, 2022718 - 2022775
Alignment:
Q  682 gctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||||||||  ||||||||||||||||||||||| | ||  |||||||| ||||||||    
T  2022718 gctgataagctaattgaagtgtttggtaaaattagcggtagaactaacttataaatgt 2022775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 739
Target Start/End: Complemental strand, 17047469 - 17047412
Alignment:
Q  682 gctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||||||||  |||||||||||||||||||| || | ||||||||| || ||||||||    
T  17047469 gctgataagctaattgaagtgtttggtaaaaatagcggttcaactagctgataaatgt 17047412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 739
Target Start/End: Original strand, 17499275 - 17499332
Alignment:
Q  682 gctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||||||||  || ||||||||||||||||| || | |||||||||||| ||||||||    
T  17499275 gctgataagctaactgaagtgtttggtaaaaatagcggttcaactaactgataaatgt 17499332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 739
Target Start/End: Complemental strand, 25602697 - 25602640
Alignment:
Q  682 gctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||||||||  || ||||||||||||||||| || ||||||||||| || ||||||||    
T  25602697 gctgataagctaactgaagtgtttggtaaaaatagcagttcaactagctgataaatgt 25602640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 739
Target Start/End: Original strand, 27658727 - 27658784
Alignment:
Q  682 gctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||||||||  |||| || ||||||||||||||| | |||||||||||| ||||||||    
T  27658727 gctgataagctaattaaaatgtttggtaaaattaacggttcaactaactgataaatgt 27658784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 739
Target Start/End: Original strand, 33561306 - 33561363
Alignment:
Q  682 gctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||||||||| || ||||||||||||||||| || | ||||||||| || ||||||||    
T  33561306 gctgataagttaactgaagtgtttggtaaaaatagcggttcaactagctgataaatgt 33561363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 739
Target Start/End: Complemental strand, 39827330 - 39827273
Alignment:
Q  682 gctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||||||||  || ||||||||||||||||| || ||||||||||| || ||||||||    
T  39827330 gctgataagctaactgaagtgtttggtaaaaataacagttcaactagctgataaatgt 39827273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 664
Target Start/End: Original strand, 52702370 - 52702407
Alignment:
Q  627 ggctttgtttggaaaaaatagctgatagcttatagccg 664  Q
    |||| ||||||| |||||||||||||||||||||||||    
T  52702370 ggctctgtttggtaaaaatagctgatagcttatagccg 52702407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 645 - 739
Target Start/End: Original strand, 5300962 - 5301056
Alignment:
Q  645 tagctgatagcttatagccggagactaatgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    ||||| |||||||||||| |  |||| ||  ||||| |||||||||| | ||||||||||||||||||||| | |||||||| ||| ||||||||    
T  5300962 tagcttatagcttatagctgatgactgatagcttatagctgataagttagttgaagtgtttggtaaaattagcggttcaactgacttataaatgt 5301056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 648 - 731
Target Start/End: Original strand, 3107269 - 3107352
Alignment:
Q  648 ctgatagcttatagccggagactaatgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaacta 731  Q
    ||||||||||||||| |  |||| |||| | || |||||||||  ||||||||||||||||||||||| | | |||||||||||    
T  3107269 ctgatagcttatagctgatgactgatgattgatagctgataagctaattgaagtgtttggtaaaattagcggctcaactaacta 3107352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 683 - 736
Target Start/End: Complemental strand, 22756985 - 22756932
Alignment:
Q  683 ctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaa 736  Q
    ||||||||  |||| |||||||||||||||||| | ||||||||||||||||||    
T  22756985 ctgataagctaattaaagtgtttggtaaaattagcggttcaactaactaataaa 22756932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 739
Target Start/End: Complemental strand, 559074 - 559017
Alignment:
Q  682 gctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||||||||  |||||||||||||||||||| || | ||||||||| || ||||||||    
T  559074 gctgataagctaattgaagtgtttggtaaaaatagcggttcaactagctgataaatgt 559017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 672 - 737
Target Start/End: Complemental strand, 34440443 - 34440378
Alignment:
Q  672 atgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaat 737  Q
    ||||||||| |||||||||  | |||||||||||||||| |||| | |||||||| ||| ||||||    
T  34440443 atgacttatagctgataagctagttgaagtgtttggtaatattagcggttcaactgacttataaat 34440378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 684 - 737
Target Start/End: Original strand, 18531692 - 18531745
Alignment:
Q  684 tgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaat 737  Q
    |||||||| ||||||||||||||||||||||| |||||||||||| | ||||||    
T  18531692 tgataagttaattgaagtgtttggtaaaattagcagttcaactaattgataaat 18531745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 685 - 739
Target Start/End: Complemental strand, 31523224 - 31523170
Alignment:
Q  685 gataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    ||||||||||||||||||||| ||||||||| | ||||||||| || ||||||||    
T  31523224 gataagtcaattgaagtgtttagtaaaattaacggttcaactagctgataaatgt 31523170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 672 - 739
Target Start/End: Original strand, 2731272 - 2731339
Alignment:
Q  672 atgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||||| || |||||||||| ||||||| |||||  |||||||| |  ||||||||||||||||||||    
T  2731272 atgactaatagctgataagttaattgaactgttttataaaattagcgtttcaactaactaataaatgt 2731339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 701 - 739
Target Start/End: Complemental strand, 14172414 - 14172376
Alignment:
Q  701 tgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  14172414 tgtttggtaaaattagcagttcaattaactaataaatgt 14172376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 649 - 715
Target Start/End: Complemental strand, 40046335 - 40046269
Alignment:
Q  649 tgatagcttatagccggagactaatgacttatggctgataagtcaattgaagtgtttggtaaaatta 715  Q
    |||||||||||||| |  |||  |||||| || |||||||||  |||||||||||||||||||||||    
T  40046335 tgatagcttatagctgatgacagatgactaatagctgataagctaattgaagtgtttggtaaaatta 40046269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 672 - 721
Target Start/End: Complemental strand, 37296120 - 37296071
Alignment:
Q  672 atgacttatggctgataagtcaattgaagtgtttggtaaaattaccagtt 721  Q
    |||||| ||| ||||||||| ||||||| ||||||||||||||| |||||    
T  37296120 atgactaatgactgataagttaattgaaatgtttggtaaaattaacagtt 37296071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 739
Target Start/End: Original strand, 44826803 - 44826860
Alignment:
Q  682 gctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||||||||  |||||||||||||||||||| || | ||||||||| || ||||||||    
T  44826803 gctgataagctaattgaagtgtttggtaaaaatagcggttcaactagctgataaatgt 44826860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 672 - 739
Target Start/End: Original strand, 72149 - 72216
Alignment:
Q  672 atgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||||||||  ||||||||  ||||||||||||||||||||||| | |||||| ||||| ||||||||    
T  72149 atgacttataactgataagctaattgaagtgtttggtaaaattaacggttcaattaactgataaatgt 72216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 672 - 735
Target Start/End: Complemental strand, 85032 - 84969
Alignment:
Q  672 atgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataa 735  Q
    ||||||||| |||||||||  ||||||||||||||||||||||| | |||||| ||||| ||||    
T  85032 atgacttatagctgataagctaattgaagtgtttggtaaaattagcggttcaattaactgataa 84969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 672 - 739
Target Start/End: Complemental strand, 40894135 - 40894068
Alignment:
Q  672 atgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||||||||  ||||||||  ||||||||||||||||||||||| | |||||| ||||| ||||||||    
T  40894135 atgacttataactgataagctaattgaagtgtttggtaaaattaacggttcaattaactgataaatgt 40894068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 676 - 739
Target Start/End: Complemental strand, 17845306 - 17845243
Alignment:
Q  676 cttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    ||||| ||| |||||  ||||||||||||||||||||||| | |||||||| ||| ||||||||    
T  17845306 cttatagcttataagctaattgaagtgtttggtaaaattagcggttcaactgacttataaatgt 17845243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 672 - 739
Target Start/End: Complemental strand, 23030583 - 23030516
Alignment:
Q  672 atgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||| |||| |||||||||  | ||||||||||||||||||||| | |||||||| ||| ||||||||    
T  23030583 atgatttatagctgataagctagttgaagtgtttggtaaaattaacggttcaactgacttataaatgt 23030516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 672 - 739
Target Start/End: Complemental strand, 35001639 - 35001572
Alignment:
Q  672 atgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||||| || |||||||||  |||| ||||||||| |||||||| | |||||||||||| ||||||||    
T  35001639 atgactaatagctgataagctaattaaagtgtttgttaaaattagcggttcaactaactgataaatgt 35001572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 739
Target Start/End: Complemental strand, 9488131 - 9488074
Alignment:
Q  682 gctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||||||||  |||||||||||||||||||| || | ||||||||| || ||||||||    
T  9488131 gctgataagctaattgaagtgtttggtaaaaatagcggttcaactagctgataaatgt 9488074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 644 - 737
Target Start/End: Complemental strand, 24171585 - 24171492
Alignment:
Q  644 atagctgatagcttatagccggagactaatgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaat 737  Q
    |||||| |||||||||||| |  | || || ||| || |||||||||  |||||||||||||||||||||||   ||||||||| || ||||||    
T  24171585 atagcttatagcttatagctgatggctgataactgatagctgataagctaattgaagtgtttggtaaaattagtggttcaactagctgataaat 24171492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 739
Target Start/End: Complemental strand, 31512016 - 31511959
Alignment:
Q  682 gctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||||||||| || ||||||||||| ||||| || | ||||||||| |||||||||||    
T  31512016 gctgataagttaactgaagtgtttgataaaaatagcggttcaactagctaataaatgt 31511959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 668 - 739
Target Start/End: Original strand, 2812667 - 2812738
Alignment:
Q  668 actaatgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||| |||||||| | |||||||  |||| |||||||||||||||||| | ||||||||| |||||||||||    
T  2812667 actagtgacttatagttgataagataattaaagtgtttggtaaaattagcggttcaactacctaataaatgt 2812738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 672 - 739
Target Start/End: Original strand, 32025642 - 32025709
Alignment:
Q  672 atgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    ||||||||| |||||||||  | |||||||||||||||||||||   |||||||||||| ||||||||    
T  32025642 atgacttatagctgataagctagttgaagtgtttggtaaaattagtggttcaactaacttataaatgt 32025709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 682 - 739
Target Start/End: Original strand, 44748245 - 44748302
Alignment:
Q  682 gctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||||||||| |||||||||||||||||||| || | ||||| |||||| ||||||||    
T  44748245 gctgataagttaattgaagtgtttggtaaaaatagcggttcatctaactgataaatgt 44748302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 672 - 739
Target Start/End: Complemental strand, 20451194 - 20451127
Alignment:
Q  672 atgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||||| || |||||||||  |||| |||||||||||||||||| | ||||||||| || ||||||||    
T  20451194 atgactgatagctgataagctaattaaagtgtttggtaaaattagcggttcaactagctgataaatgt 20451127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 672 - 739
Target Start/End: Complemental strand, 42218364 - 42218297
Alignment:
Q  672 atgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||||| || ||| |||||| ||||||||||||||||||||||| | ||| ||||| || ||||||||    
T  42218364 atgactaatagcttataagttaattgaagtgtttggtaaaattagcggttgaactagctgataaatgt 42218297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 667 - 737
Target Start/End: Original strand, 52594729 - 52594799
Alignment:
Q  667 gactaatgacttatggctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaat 737  Q
    |||||||  ||||| |||||||||  | ||||||||||||||||||||| | |||||||| ||| ||||||    
T  52594729 gactaatagcttatagctgataagctagttgaagtgtttggtaaaattaacggttcaactgacttataaat 52594799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 739
Target Start/End: Complemental strand, 35500342 - 35500285
Alignment:
Q  682 gctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||||||||  |||||||||||||||||||| || | ||||||||| || ||||||||    
T  35500342 gctgataagctaattgaagtgtttggtaaaaatagcggttcaactagctgataaatgt 35500285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 739
Target Start/End: Complemental strand, 44846357 - 44846300
Alignment:
Q  682 gctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||||||||  || ||||||||||||||||| || | |||||||||||| ||||||||    
T  44846357 gctgataagctaactgaagtgtttggtaaaaatagcggttcaactaactgataaatgt 44846300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0173 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 684 - 739
Target Start/End: Original strand, 22301 - 22356
Alignment:
Q  684 tgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaatgt 739  Q
    |||||||  |||||||||||||||||||| || | ||||||||| |||||||||||    
T  22301 tgataagctaattgaagtgtttggtaaaaataacggttcaactagctaataaatgt 22356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 682 - 737
Target Start/End: Original strand, 129596 - 129651
Alignment:
Q  682 gctgataagtcaattgaagtgtttggtaaaattaccagttcaactaactaataaat 737  Q
    |||||||||  || ||||||||||||||||| || |||||||||||||| ||||||    
T  129596 gctgataagctaactgaagtgtttggtaaaaatagcagttcaactaactgataaat 129651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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