View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0120-INSERTION-7 (Length: 149)
Name: NF0120-INSERTION-7
Description: NF0120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0120-INSERTION-7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 142; Significance: 7e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 7e-75
Query Start/End: Original strand, 6 - 147
Target Start/End: Original strand, 38176199 - 38176340
Alignment:
| Q |
6 |
caccatgtaccttattttgaagatcacccagcatgacaagtccttaatgtaactttttggaattttatcttctgatccagaaacttcttaaataccagta |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38176199 |
caccatgtaccttattttgaagatcacccagcatgacaagtccttaatgtaactttttggaattttatcttctgatccagaaacttcttaaataccagta |
38176298 |
T |
|
| Q |
106 |
gttgttaataagtttttaccatccatccctactaaacatatt |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38176299 |
gttgttaataagtttttaccatccatccctactaaacatatt |
38176340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 8e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 8e-44
Query Start/End: Original strand, 6 - 127
Target Start/End: Original strand, 49109340 - 49109461
Alignment:
| Q |
6 |
caccatgtaccttattttgaagatcacccagcatgacaagtccttaatgtaactttttggaattttatcttctgatccagaaacttcttaaataccagta |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||| |||| ||||||||||||||||||||| |||| |
|
|
| T |
49109340 |
caccatgtaccttattttgaagatcacccagcatgacaagtccttaatataacattttgaaattttaatttctaatccagaaacttcttaaatactagta |
49109439 |
T |
|
| Q |
106 |
gttgttaataagtttttaccat |
127 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
49109440 |
gtagttaataagtttttaccat |
49109461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 4e-39
Query Start/End: Original strand, 6 - 127
Target Start/End: Original strand, 49534281 - 49534402
Alignment:
| Q |
6 |
caccatgtaccttattttgaagatcacccagcatgacaagtccttaatgtaactttttggaattttatcttctgatccagaaacttcttaaataccagta |
105 |
Q |
| |
|
|||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||| ||||||| ||||| |||||||| |||||||||||| |||| |
|
|
| T |
49534281 |
caccatgtaccttactttgaagatcatccaccatgacaagtccttaatgtaactttttgaaattttaacttctaatccagaatcttcttaaatactagta |
49534380 |
T |
|
| Q |
106 |
gttgttaataagtttttaccat |
127 |
Q |
| |
|
|||| ||| ||||||||||||| |
|
|
| T |
49534381 |
gttgctaacaagtttttaccat |
49534402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 31
Target Start/End: Complemental strand, 5656780 - 5656753
Alignment:
| Q |
4 |
aacaccatgtaccttattttgaagatca |
31 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
5656780 |
aacaccatgtaccttattttgaagatca |
5656753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1395 times since January 2019
Visitors: 1419