View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0120-INSERTION-9 (Length: 587)
Name: NF0120-INSERTION-9
Description: NF0120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0120-INSERTION-9 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 180 - 587
Target Start/End: Complemental strand, 50750886 - 50750463
Alignment:
| Q |
180 |
tttattttaatttgttggttgactgtggtaattagagataggtatgcttttttccatgcagtagattatcacatacttcaatatgacaaatactactata |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50750886 |
tttattttaatttgttggttgactgtggtaattagagataggtatgcttttttccatgcagtagattatcacatacttcaatatgacaaatactactata |
50750787 |
T |
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| Q |
280 |
ttaggatatagagaaattaacatgatactgtgtgcgagaaagttcctcccagtttcccaatccataatatatcacgtttcataatgttagttagtggtct |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
50750786 |
ttaggatatagagaaattaacatgatactgtgtgcgagaaagttccttcttgtttcccaatccataatatatcacgtttcat-atgttagttagtggtct |
50750688 |
T |
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| Q |
380 |
aaacttggaaccaaatgtacttttcatcttagtttatttttatggggttagtgctgtcacattatttggtttcaatttcaatgccctaatgtttcatcgt |
479 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50750687 |
aaacttggaaccaaatgtacttttcatcttagtttatttttatggggttagtgctgtcacattatttggtttcaatttcaatgccctaatgtttcttcgt |
50750588 |
T |
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| Q |
480 |
tcataaagtaaaagatatattt-----------------gactagagagcgacagctggggtggatgggtgttctatacaacaattgatgttgtaattta |
562 |
Q |
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| T |
50750587 |
tcataaagtaaaagatatattttatatttactactactagactagagggcgacagctggggtggatgggtgttctatacaacaattgatgttgtaattta |
50750488 |
T |
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| Q |
563 |
ttcatggttttcaacgtttctatga |
587 |
Q |
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| T |
50750487 |
ttcatggttttcaatgtttttatga |
50750463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 8 - 188
Target Start/End: Complemental strand, 50752105 - 50751926
Alignment:
| Q |
8 |
acaaacatattgaaaggtacgctgaatatgtcatatgttgatgcggtgtacaattagttttatcgaatagaacaataattgaccaactcatgcaactata |
107 |
Q |
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| T |
50752105 |
acaaacatattgaaaggtacgctgaatatgtcatatgttgatgcggtgtacaattagttttatcgaatagaacaataattgaccaactcatgcaactata |
50752006 |
T |
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| Q |
108 |
ctaatttataagagcacacctagcttatctacgaccaattaaaactacagaacataccttttctgaactttatttatttta |
188 |
Q |
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| T |
50752005 |
ctaa-ttataagagcacacctagcttatctacgaccaattaaaactacagaacataccttttctgaactttatttatttta |
50751926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 180 - 431
Target Start/End: Original strand, 4323631 - 4323881
Alignment:
| Q |
180 |
tttattttaatttgttggttgactgtggtaattagagataggtatgcttttttccatgcagtagattatcacatacttcaatatgacaaatactactata |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4323631 |
tttattttaatttgttggttgactgtggtaattagagataggtatgcttttttccatgcagtagattatcacatacttcaatatgacaaatactactata |
4323730 |
T |
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| Q |
280 |
ttaggatatagagaaattaacatgatactgtgtgcgagaaagttcctcccagtttcccaatccataatatatcacgtttcataatgttagttagtggtct |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4323731 |
ttaggatatagagaaattaacatgatactgtgtgcgagaaagttccttcttgtttcccaatccataatatatcacgtttcat-atgttagttagtggtct |
4323829 |
T |
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| Q |
380 |
aaacttggaaccaaatgtacttttcatcttagtttatttttatggggttagt |
431 |
Q |
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| T |
4323830 |
aaacttggaaccaaatgtacttttcatcttagtttatttttatggggttagt |
4323881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 78 - 188
Target Start/End: Original strand, 4322482 - 4322591
Alignment:
| Q |
78 |
aacaataattgaccaactcatgcaactatactaatttataagagcacacctagcttatctacgaccaattaaaactacagaacataccttttctgaactt |
177 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4322482 |
aacaataattgaccaactcatgcaactatactaatt-ataagagcacacctagcttatctacgaccaattaaaactacagaacataccttttctgaactt |
4322580 |
T |
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| Q |
178 |
tatttatttta |
188 |
Q |
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| T |
4322581 |
tatttatttta |
4322591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 540 - 587
Target Start/End: Original strand, 4325481 - 4325528
Alignment:
| Q |
540 |
acaacaattgatgttgtaatttattcatggttttcaacgtttctatga |
587 |
Q |
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| T |
4325481 |
acaacaattgatgttgtaatttatttatggttttcaacgtttctatga |
4325528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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