View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0121_low_9 (Length: 252)
Name: NF0121_low_9
Description: NF0121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0121_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 5 - 244
Target Start/End: Original strand, 35246371 - 35246610
Alignment:
| Q |
5 |
atggaacagttttaagtttagagcaatgaatttagagaaataaatttgaattttagtgaaggaattgaaaatagatcatgcaatatcaatttttcaagaa |
104 |
Q |
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| T |
35246371 |
atggaacaattataagtttaaaccaatgaatttagagaaataaatttgaactttagtgaaggaattgaaaatagatcatgcaatatcaatttttcaagaa |
35246470 |
T |
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| Q |
105 |
catgggtagcaatatcatggcttaaaatatgaactggatctttagttggtaaagtaacaaacaaattgggccgtgattataaaaatttggtaatatgatg |
204 |
Q |
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| T |
35246471 |
catgggaagcaatatcatggcttaaaatatgaactggatctttagttggtaaagtaacaaacaaattgggtcgtgattataaaaatttggtaatatgatg |
35246570 |
T |
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| Q |
205 |
aattaaaaaataaataggatttgttgttgcaacagctagg |
244 |
Q |
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| T |
35246571 |
aattaaaaaataaataggatttgttgttgcaacagttagg |
35246610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 231
Target Start/End: Original strand, 35201186 - 35201401
Alignment:
| Q |
17 |
taagtttagagcaatgaatttagagaaataaatttgaattttagtgaaggaattgaaaatagatcatgcaatatcaatttttcaagaaca-tgggtagca |
115 |
Q |
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| T |
35201186 |
taagcttatagcaatgaatttatataaatcgatttgaacttgaatataggaactgaaaacaaatcatgaaaattcaatttatcaagaacaatgtgtagta |
35201285 |
T |
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| Q |
116 |
atatcatggcttaaaatatgaactggatctttagttggtaaagtaacaaacaaattgggccgtgattataaaaatttggtaatatgatgaatt-aaaaaa |
214 |
Q |
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| T |
35201286 |
ataccaaggcttaaaaaaggagcagtttctttagttg-taaactaacaaacaaattgagcagagattttaaaaatttggtaaaatgatacattgaaaaaa |
35201384 |
T |
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| Q |
215 |
taaataggatttgttgt |
231 |
Q |
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| T |
35201385 |
caaataggattggttgt |
35201401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 35271718 - 35271921
Alignment:
| Q |
18 |
aagtttagagcaatgaatttagagaaataaatttgaattttagtgaaggaattgaaaatagatcatgcaatatcaatttttcaagaacatgggtagcaat |
117 |
Q |
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| T |
35271718 |
aagtttacagctatgactttatagaaatcaattttaacttgaacaaaggaagggaaaacaaatcatgaaaaatcaattcgccaagaacatgtgtagaaat |
35271817 |
T |
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| Q |
118 |
atcatggcttaaaatatgaactggatctttagttggtaaagtaacaaacaaattgggccgtgattataaaaatttggtaatatgatgaattaaaaaataa |
217 |
Q |
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| || | ||||||||| ||||| | ||||||||| |||||||||||||||||||| | ||| ||||||||||||| |||||| ||| ||||||| |
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| T |
35271818 |
aacaagtcttaaaataagaactatagctttagttg-taaagtaacaaacaaattggtctaatatttaaaaaatttggtaaaatgatgcattcaaaaatat |
35271916 |
T |
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| Q |
218 |
atagg |
222 |
Q |
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||||| |
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| T |
35271917 |
atagg |
35271921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 222
Target Start/End: Original strand, 35264499 - 35264591
Alignment:
| Q |
129 |
aaatatgaactggatctttagttggtaaagtaacaaacaaattgggccgtgattataaaaatttggtaatatgatgaattaaaaaataaatagg |
222 |
Q |
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| T |
35264499 |
aaataagaactgcatctttagttg-taaagtaacaaacaaattggtcagatatttaaaaaaattggtaaaatgatgcattcaaaaagaaatagg |
35264591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 35221160 - 35221231
Alignment:
| Q |
4 |
aatggaacagttttaagtttagagcaatgaatttagagaaataaatttgaattttagtgaaggaattgaaaa |
75 |
Q |
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| T |
35221160 |
aatggaataggtataagtttatagcaatgaattaagagaaatcaatttgaacttgaatgaaggaactgaaaa |
35221231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 175
Target Start/End: Original strand, 35191712 - 35191776
Alignment:
| Q |
110 |
gtagcaatatcatggcttaaaatatgaactggatctttagttggtaaagtaacaaacaaattgggc |
175 |
Q |
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| T |
35191712 |
gtagcaataccaaggcttaaaacaggaactgcatttttagctg-taaagtaacaaacaaattgggc |
35191776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 36778296 - 36778373
Alignment:
| Q |
144 |
ctttagttggtaaagtaacaaacaaattgggccgtgattataaaaatttggtaatatgatgaattaaaaaataaatagg |
222 |
Q |
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| T |
36778296 |
ctttagttg-taaagtaacaaacaaattggtctgatatttaaaaaatttggtaaaatgatgcattcaaaaataaatagg |
36778373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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