View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0122_high_1 (Length: 899)

Name: NF0122_high_1
Description: NF0122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0122_high_1
NF0122_high_1
[»] chr6 (6 HSPs)
chr6 (113-829)||(5921130-5921846)
chr6 (179-783)||(26967837-26968443)
chr6 (275-757)||(14813143-14813625)
chr6 (2-46)||(5921913-5921957)
chr6 (341-389)||(16733009-16733057)
chr6 (719-805)||(6340973-6341059)
[»] chr5 (6 HSPs)
chr5 (116-829)||(20325432-20326145)
chr5 (439-586)||(15447253-15447400)
chr5 (650-809)||(11922982-11923141)
chr5 (342-420)||(29125294-29125372)
chr5 (719-805)||(16992268-16992354)
chr5 (1-47)||(20326168-20326214)
[»] chr4 (5 HSPs)
chr4 (344-757)||(10636536-10636949)
chr4 (275-757)||(5237685-5238167)
chr4 (347-413)||(22178736-22178802)
chr4 (611-809)||(22642017-22642215)
chr4 (467-583)||(25226927-25227044)
[»] chr3 (5 HSPs)
chr3 (347-413)||(19588505-19588571)
chr3 (651-708)||(25571626-25571683)
chr3 (347-413)||(12283720-12283786)
chr3 (245-387)||(34503758-34503900)
chr3 (342-539)||(49728189-49728386)
[»] chr1 (2 HSPs)
chr1 (347-413)||(52776100-52776166)
chr1 (344-757)||(2358144-2358557)
[»] chr2 (6 HSPs)
chr2 (347-519)||(29497877-29498049)
chr2 (368-587)||(34893126-34893345)
chr2 (503-549)||(13129139-13129185)
chr2 (719-805)||(20485103-20485189)
chr2 (719-805)||(28016002-28016088)
chr2 (342-411)||(8309856-8309925)
[»] scaffold0329 (1 HSPs)
scaffold0329 (347-413)||(9429-9495)
[»] chr8 (1 HSPs)
chr8 (344-387)||(188136-188179)


Alignment Details
Target: chr6 (Bit Score: 629; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 629; E-Value: 0
Query Start/End: Original strand, 113 - 829
Target Start/End: Complemental strand, 5921846 - 5921130
Alignment:
Q  113 cattgattcttcttcaccatggctcctcgtaatcaaggtcctgatcaagaatctccattttacgtgcatccaagtgaaggtccttcatctttaatcgttt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||    
T  5921846 cattgattcttcttcaccatggctcctcgtaatcaaggtcctgatcaagaatctccatttcacgtgaatccaagtgaaggtccttcatctttaattgttt 5921747  T
Q  213 ctcctaagcttgatggttccagttatctagcttggaatcgttccatgaagcgttctctaggcacgaagaacaagcttggattcaccaatggctccattga 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5921746 ctcctaagcttgatggttccagttatctagcttggaatcgttccatgaagcgttctctaggcacgaagaacaagcttggattcatcaatggctccattga 5921647  T
Q  313 acaacctgatcttgatgatcttaaccggtctgcatgggaacgttgcaaccatttggttcaatcttggctcatcaatttcgtttcagattctattgctcaa 412  Q
    ||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  5921646 acaacccaatcttgatgatcttaaccggtctgcatgggaatgttgcaaccatttggttcaatcttggctcatcaattccgtttcaaattctattgctcaa 5921547  T
Q  413 attgttgtcttctttgtcattgcatatgaggtatggcaagatctccatgaaagtttctctaaggttgatcgcattcgtattacaaatttgcgttcttcta 512  Q
    | ||||||||||| ||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||||||||||    
T  5921546 actgttgtcttctatgtcattgcttatgaggtatggcaagatctccatgaacgtatctctaaggttgatcgcatttgtattgcaaatttgcgttcttcta 5921447  T
Q  513 ttaacaatttgaaacaaggtgcaaaatatgttcttgagtattttactgaattgaaagcgttatgggaagaactttcaccacatagaccaattccatcttg 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5921446 ttaacaatttgaaacaaggtgcaaaatatgttcttgagtattttactgaattgaaagcgttatgggaagaactttcatcacatagaccaattccatcttg 5921347  T
Q  613 tatttgtgttcatgcttgccattgtgatgctactagggttgctaagatttacagaactgaggatcaaatcatgcagtttttgactagtttgaatgataat 712  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5921346 tatttgtgttcatgcttgccgttgtgatgctactagggttgctaagatttacagaactgaggatcaaatcatgcagtttttgactggtttgaatgataat 5921247  T
Q  713 tttggggttgttaagactcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataattctttac 812  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5921246 tttggggttgttaagactcaagttcttcttcttgatcctcttcctccgctcaagaaggtttactctcttgtggtgcaagaagaaaacaataattctttac 5921147  T
Q  813 caatttcagtctctgct 829  Q
    ||||||||||| |||||    
T  5921146 caatttcagtcactgct 5921130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 179 - 783
Target Start/End: Original strand, 26967837 - 26968443
Alignment:
Q  179 catccaagtgaaggtccttcatctttaatcgtttctcctaagcttgatggttccagttatctagcttggaatcgttccatgaagcgttctctaggcacga 278  Q
    ||||| |||||||||||||| ||  | || |||||||| || |||||||||||||  ||| | |  ||||||| |||||||||||||||  | || || |    
T  26967837 catccgagtgaaggtccttcttccctcattgtttctcccaaacttgatggttccaactatgtggtgtggaatcattccatgaagcgttcattgggaacaa 26967936  T
Q  279 agaacaagcttggattcaccaatggctccattgaacaacctgatcttgatgatcttaaccggtctgcatgggaacgttgcaaccatttggttcaatcttg 378  Q
    ||||||| |||| ||||| ||| || ||||||     |||||| ||||| |||||||||||   ||  ||||||||  |||| || ||||||||||||||    
T  26967937 agaacaaacttgaattcaacaacggatccattcctacacctgaccttgaagatcttaaccgtagtgtttgggaacgcagcaatcacttggttcaatcttg 26968036  T
Q  379 gctcatcaatttcgtttcagattctattgctcaaat-tgttgtcttctttgtcattgcatatgaggtatggcaagatctccatgaaagtttctctaaggt 477  Q
    |||||| ||||  |||||| |||| ||||||||||  | || | |||| ||  |   | | ||| || ||||||||||| ||||||   || || |||||    
T  26968037 gctcattaattctgtttcatattccattgctcaaacgtttttttttctatgatacaacttttgaagtttggcaagatcttcatgaattcttttccaaggt 26968136  T
Q  478 tgatcgcattcgtattacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttgagtattttactgaattgaaagcgttatgg 577  Q
     |||   ||||  ||| | | | | ||||  || || ||||  ||||| ||||||   |||| ||||||||| ||||||||||| |||||    ||||||    
T  26968137 ggatataattcaaattgctactctacgtttctcaatcaacaccttgaagcaaggtatcaaatctgttcttgaatattttactgagttgaagagtttatgg 26968236  T
Q  578 gaagaactttcaccacatagaccaattccatcttgtatttgtgttcatgcttgccattgtgatgctactagggttgctaagatttacagaactgaggatc 677  Q
     | ||||||||  |||||||||| |||||  ||||| | ||||||||| |||| | |||||| || ||||| ||||||||| | || |||| ||| || |    
T  26968237 taggaactttcttcacatagacctattcctacttgtgtatgtgttcatccttgtcgttgtgaagcaactagagttgctaaggtgtatagaaatgaagacc 26968336  T
Q  678 aaatcatgcagtttttgactagtttgaatga-taattttggggttgttaagactcaagttcttcttcttgatcctcttcctcctctcaagaaggtttact 776  Q
    |||| ||||| ||| ||||| ||||||||||  ||||||    | | ||||||||||||  |  | ||||||||| ||||| ||||||| || |||||||    
T  26968337 aaattatgcaatttctgactggtttgaatgaccaattttaccatagataagactcaagtcatgttacttgatcctattccttctctcaataaagtttact 26968436  T
Q  777 ctcttgt 783  Q
    |||||||    
T  26968437 ctcttgt 26968443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 275 - 757
Target Start/End: Original strand, 14813143 - 14813625
Alignment:
Q  275 acgaagaacaagcttggattcaccaatggctccattgaacaacctgatcttgatgatcttaaccggtctgcatgggaacgttgcaaccatttggttcaat 374  Q
    ||||||||||||||||| |||| |||||| ||||||      ||||||   |||||| | |||||  | ||||||||||| || || |||||||||||||    
T  14813143 acgaagaacaagcttggtttcatcaatggttccattcctatgcctgatgaagatgatttgaaccgcacagcatgggaacgctgtaatcatttggttcaat 14813242  T
Q  375 cttggctcatcaatttcgtttcagattctattgctcaaattgttgtcttctttgtcattgcatatgaggtatggcaagatctccatgaaagtttctctaa 474  Q
    ||||||| ||||| |  ||||| || || |||||||||| | |||| || | ||    ||||  |||||| ||||  ||| |  | ||| | ||||| ||    
T  14813243 cttggcttatcaactctgtttctgagtccattgctcaaactattgttttttgtgattctgcacttgaggtttggcttgatttgaaagaacgattctccaa 14813342  T
Q  475 ggttgatcgcattcgtattacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttgagtattttactgaattgaaagcgtta 574  Q
      ||||||| ||||| ||| ||||||| ||||||   || || ||||||||||||||  |||||| |||| | || ||||| |||||| ||||  | |||    
T  14813343 aattgatcgtattcgcattgcaaatttacgttctaacatcaataatttgaaacaaggatcaaaatctgttttggattatttcactgaaatgaagtcctta 14813442  T
Q  575 tgggaagaactttcaccacatagaccaattccatcttgtatttgtgttcatgcttgccattgtgatgctactagggttgctaagatttacagaactgagg 674  Q
    ||||| ||| | ||  |||||||||| || ||   ||||  |||||||||| |||| | ||||| |||  |||  |||||||||||| | |||| |||||    
T  14813443 tgggaggaattatcttcacatagacctatccctaattgttcttgtgttcatccttgtcgttgtgctgcatctaaagttgctaagattcatagaaatgagg 14813542  T
Q  675 atcaaatcatgcagtttttgactagtttgaatgataattttggggttgttaagactcaagttcttcttcttgatcctcttcct 757  Q
    |||| || ||||| ||| | ||  | ||||||||| | |||   |||||||  |||||||||||||| |||||||||||||||    
T  14813543 atcagattatgcaatttcttacaggattgaatgatcaattttctgttgttagaactcaagttcttctccttgatcctcttcct 14813625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 5921957 - 5921913
Alignment:
Q  2 tgattgcttcgtcttcaagcttcgttctctgtgtatttgttgctt 46  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  5921957 tgattgcttcgtcttcaagcttcgttctctatgtatttgttgctt 5921913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 341 - 389
Target Start/End: Complemental strand, 16733057 - 16733009
Alignment:
Q  341 tctgcatgggaacgttgcaaccatttggttcaatcttggctcatcaatt 389  Q
    |||||||||||||| || || |||||||| |||||||||||||||||||    
T  16733057 tctgcatgggaacggtgtaatcatttggtgcaatcttggctcatcaatt 16733009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 719 - 805
Target Start/End: Original strand, 6340973 - 6341059
Alignment:
Q  719 gttgttaagactcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataat 805  Q
    ||||| |||||||||||||||||| | ||||| |||||| |  |||| |||||||| ||| | || || ||||||||||| ||||||    
T  6340973 gttgtgaagactcaagttcttcttatggatccacttccttcaatcaacaaggtttattctatggttgttcaagaagaaagtaataat 6341059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 490; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 116 - 829
Target Start/End: Complemental strand, 20326145 - 20325432
Alignment:
Q  116 tgattcttcttcaccatggctcctcgtaatcaaggtcctgatcaagaatctccattttacgtgcatccaagtgaaggtccttcatctttaatcgtttctc 215  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||    
T  20326145 tgattcttcttcaccatgcctcctcgtaatcaaggtcctgatcaagaatctcctttttacgttcatccaagtgaaggtccttcatcgttaatcgtttctc 20326046  T
Q  216 ctaagcttgatggttccagttatctagcttggaatcgttccatgaagcgttctctaggcacgaagaacaagcttggattcaccaatggctccattgaaca 315  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || | ||||||||| ||||||||    
T  20326045 ctaaacttgatggttccaattatctagcttggaatcgttccatgaagcgttctctaggcacaaagaacaagcttggttttatcaatggctcaattgaaca 20325946  T
Q  316 acctgatcttgatgatcttaaccggtctgcatgggaacgttgcaaccatttggttcaatcttggctcatcaatttcgtttcagattctattgctcaaatt 415  Q
    ||||||||||||||||||||| || ||||||||||||||||| ||   |||||| ||||||||| | |||||||  |||||||||||||||||||||| |    
T  20325945 acctgatcttgatgatcttaatcgatctgcatgggaacgttgtaattttttggtgcaatcttggataatcaattctgtttcagattctattgctcaaact 20325846  T
Q  416 gttgtcttctttgtcattgcatatgaggtatggcaagatctccatgaaagtttctctaaggttgatcgcattcgtattacaaatttgcgttcttctatta 515  Q
    |||||||| | || || ||| |||||||||||||||||||| |||||| |||| ||||||| |||||| ||||||||| |||||||||||||||| ||||    
T  20325845 gttgtcttttatgacactgcttatgaggtatggcaagatcttcatgaacgtttttctaaggctgatcgtattcgtattgcaaatttgcgttcttccatta 20325746  T
Q  516 acaatttgaaacaaggtgcaaaatatgttcttgagtattttactgaattgaaagcgttatgggaagaactttcaccacatagaccaattccatcttgtat 615  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||| |||||||||||| |    
T  20325745 acaacttgaaacaaggtgcaaaatctgttcttgagtattttactgaattgaaatctttatgggaagaactttcatcacatagacctattccatcttgtgt 20325646  T
Q  616 ttgtgttcatgcttgccattgtgatgctactagggttgctaagatttacagaactgaggatcaaatcatgcagtttttgactagtttgaatgataatttt 715  Q
     |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  20325645 gtgtgttcatgcttgccgttgtgatgctactagggtggctaagatttacagaactgaggatcaaattatgcagtttttgactggtttgaatgataatttt 20325546  T
Q  716 ggggttgttaagactcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataattctttaccaa 815  Q
    || ||||||||||||||||||||||||||| |||||||||| ||||| || || ||||| ||||||||||||||||||||||||||||| ||||||||||    
T  20325545 ggagttgttaagactcaagttcttcttcttaatcctcttccacctcttaataaagtttattctcttgtggtgcaagaagaaagcaataactctttaccaa 20325446  T
Q  816 tttcagtctctgct 829  Q
    ||||| ||||||||    
T  20325445 tttcaatctctgct 20325432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 439 - 586
Target Start/End: Original strand, 15447253 - 15447400
Alignment:
Q  439 tgaggtatggcaagatctccatgaaagtttctctaaggttgatcgcattcgtattacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaa 538  Q
    |||||| |||||||||||  | ||  |||| || || |||||||| ||| | |||  |||||| ||||| || ||||||||| | ||||||||| ||| |    
T  15447253 tgaggtttggcaagatcttaaggagcgtttttcaaaagttgatcgtattagaattgaaaatttacgttcctccattaacaatctcaaacaaggttcaata 15447352  T
Q  539 tatgttcttgagtattttactgaattgaaagcgttatgggaagaactt 586  Q
    | |||| | |||||||| ||||| |||||||| |||||||||||||||    
T  15447353 tttgttttggagtatttcactgagttgaaagctttatgggaagaactt 15447400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 650 - 809
Target Start/End: Original strand, 11922982 - 11923141
Alignment:
Q  650 gttgctaagatttacagaactgaggatcaaatcatgcagtttttgactagtttgaatgataattttggggttgttaagactcaagttcttcttcttgatc 749  Q
    ||||| |||||||||| |||| | |||||||||||||| ||| ||||  | ||||||||| | |||   ||  | || ||||||||| | ||||||||||    
T  11922982 gttgccaagatttacataactaaagatcaaatcatgcaatttctgacaggcttgaatgatcaattttctgtattaaaaactcaagttttgcttcttgatc 11923081  T
Q  750 ctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataattctt 809  Q
    || ||||| | || || ||||||||||  ||||| ||  |||||||||||||||| ||||    
T  11923082 ctattccttccctgaacaaggtttacttccttgttgtttaagaagaaagcaataactctt 11923141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 342 - 420
Target Start/End: Original strand, 29125294 - 29125372
Alignment:
Q  342 ctgcatgggaacgttgcaaccatttggttcaatcttggctcatcaatttcgtttcagattctattgctcaaattgttgt 420  Q
    ||||||||||||| ||||| |||||||| || |||||||| ||||| | |||||| ||||| ||||| |||| ||||||    
T  29125294 ctgcatgggaacgctgcaatcatttggtgcagtcttggcttatcaactccgtttctgattcaattgcacaaactgttgt 29125372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 719 - 805
Target Start/End: Complemental strand, 16992354 - 16992268
Alignment:
Q  719 gttgttaagactcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataat 805  Q
    ||||| |||||||||||||||||| | ||||| |||||| |  |||| |||||||| ||| | || || ||||||||||| ||||||    
T  16992354 gttgtgaagactcaagttcttcttatggatccacttccttcaatcaacaaggtttattctatggttgttcaagaagaaagtaataat 16992268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 20326214 - 20326168
Alignment:
Q  1 ttgattgcttcgtcttcaagcttcgttctctgtgtatttgttgcttc 47  Q
    ||||||||||||||||||||||| ||| |||| | ||||||||||||    
T  20326214 ttgattgcttcgtcttcaagctttgttttctgagaatttgttgcttc 20326168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 9e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 344 - 757
Target Start/End: Original strand, 10636536 - 10636949
Alignment:
Q  344 gcatgggaacgttgcaaccatttggttcaatcttggctcatcaatttcgtttcagattctattgctcaaattgttgtcttctttgtcattgcatatgagg 443  Q
    ||||||||||| ||||| |||||||||||||||||||| ||||| |  | ||| || || |||||||||| | |||| || | ||    ||||  |||||    
T  10636536 gcatgggaacgatgcaatcatttggttcaatcttggcttatcaactcagattctgagtccattgctcaaactattgttttttgtgattctgcacttgagg 10636635  T
Q  444 tatggcaagatctccatgaaagtttctctaaggttgatcgcattcgtattacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaatatgt 543  Q
    | ||||  ||| |  | ||||  ||||| ||  ||||||| ||||| ||| ||||||| ||||||   || || ||||||||||||||  |||||| |||    
T  10636636 tttggcttgatttgaaagaaaaattctccaaaattgatcgtattcgcattgcaaatttacgttctaacatcaataatttgaaacaaggatcaaaatctgt 10636735  T
Q  544 tcttgagtattttactgaattgaaagcgttatgggaagaactttcaccacatagaccaattccatcttgtatttgtgttcatgcttgccattgtgatgct 643  Q
    | | || ||||| |||||| ||||  | |||||||| ||| | ||  |||||||||| || ||   ||||  |||||||||| |||| | ||||| |||     
T  10636736 tttggattatttcactgaaatgaagtccttatgggaggaattatcttcacatagacctatccctaattgttcttgtgttcatccttgtcgttgtgctgca 10636835  T
Q  644 actagggttgctaagatttacagaactgaggatcaaatcatgcagtttttgactagtttgaatgataattttggggttgttaagactcaagttcttcttc 743  Q
     |||| |||||||||||| | |||| ||||||||| || ||||| ||| | ||  | ||||||||  | |||   |||||||  |||||||||||||| |    
T  10636836 tctagagttgctaagattcatagaaatgaggatcagattatgcaatttcttacaggattgaatgaccaattttctgttgttagaactcaagttcttctcc 10636935  T
Q  744 ttgatcctcttcct 757  Q
    ||||||||||||||    
T  10636936 ttgatcctcttcct 10636949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 275 - 757
Target Start/End: Original strand, 5237685 - 5238167
Alignment:
Q  275 acgaagaacaagcttggattcaccaatggctccattgaacaacctgatcttgatgatcttaaccggtctgcatgggaacgttgcaaccatttggttcaat 374  Q
    ||||||||||||||||| |||| |||||| ||||||      ||||||   |||||| | |||||  | ||||||||||| || || |||||||||||||    
T  5237685 acgaagaacaagcttggtttcatcaatggttccattcctatgcctgatgaagatgatttgaaccgcacagcatgggaacgctgtaatcatttggttcaat 5237784  T
Q  375 cttggctcatcaatttcgtttcagattctattgctcaaattgttgtcttctttgtcattgcatatgaggtatggcaagatctccatgaaagtttctctaa 474  Q
    ||||||| ||||| |  ||||| || || |||||||||| | |||| || | ||    ||||  |||||| ||||  ||| |  | ||| | ||||| ||    
T  5237785 cttggcttatcaactctgtttctgagtccattgctcaaactattgttttttgtgattctgcacttgaggtttggcttgatttgaaagaacgattctccaa 5237884  T
Q  475 ggttgatcgcattcgtattacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttgagtattttactgaattgaaagcgtta 574  Q
      ||||||| ||||| ||| ||||||| ||||||   || || ||||||||||||||   ||||| |||| | || ||||| |||||| ||||  | |||    
T  5237885 aattgatcgtattcgcattgcaaatttacgttctaacatcaataatttgaaacaaggattaaaatctgttttggattatttcactgaaatgaagtcctta 5237984  T
Q  575 tgggaagaactttcaccacatagaccaattccatcttgtatttgtgttcatgcttgccattgtgatgctactagggttgctaagatttacagaactgagg 674  Q
    ||||| ||| | ||  |||||||||  || ||   ||||  |||||||||| |||| | ||||| |||  |||  |||||||||||| | |||| |||||    
T  5237985 tgggaggaattatcttcacatagacatatccctaattgttcttgtgttcatccttgtcgttgtgctgcatctaaagttgctaagattcatagaaatgagg 5238084  T
Q  675 atcaaatcatgcagtttttgactagtttgaatgataattttggggttgttaagactcaagttcttcttcttgatcctcttcct 757  Q
    |||| || ||||| ||| | ||  | ||||||||| | |||   |||||||  |||||||||||||| |||||||||||||||    
T  5238085 atcagattatgcaatttcttacaggattgaatgatcaattttctgttgttagaactcaagttcttctccttgatcctcttcct 5238167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 347 - 413
Target Start/End: Complemental strand, 22178802 - 22178736
Alignment:
Q  347 tgggaacgttgcaaccatttggttcaatcttggctcatcaatttcgtttcagattctattgctcaaa 413  Q
    |||||||| |||||||||||||| |||||||||||||| ||||  || || ||||| ||||||||||    
T  22178802 tgggaacgatgcaaccatttggtacaatcttggctcattaattcagtctctgattcaattgctcaaa 22178736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 611 - 809
Target Start/End: Original strand, 22642017 - 22642215
Alignment:
Q  611 tgtatttgtgttcatgcttgccattgtgatgctactagggttgctaagatttacagaactgaggatcaaatcatgcagtttttgactagtttgaatgata 710  Q
    ||||||||||| ||| | ||||  ||||| |||||| | ||||| |||| | | ||||||||||||||||| ||||| ||||| ||| | |||||||||     
T  22642017 tgtatttgtgtgcatccatgccggtgtgaagctactcgtgttgccaagactcatagaactgaggatcaaataatgcaatttttaactggcttgaatgatc 22642116  T
Q  711 attttggggttgttaagactcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataattctt 809  Q
    | ||    || || ||||||||  ||||  | ||||||||||| ||| || | || |||||||| ||| | ||| | |||||||| |||||||||||||    
T  22642117 aattctctgtggtaaagactcagattctattgcttgatcctctaccttctttgaataaggtttattctatggtgattcaagaagagagcaataattctt 22642215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 583
Target Start/End: Original strand, 25226927 - 25227044
Alignment:
Q  467 ttctctaaggttgatcgcattcgta-ttacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttgagtattttactgaattg 565  Q
    ||||||||| |||||||| || | | || ||||| ||||||||||  |||||||| | | ||||||| | ||||||||  | |||||||| | |||| ||    
T  25226927 ttctctaagattgatcgccttagaaattgcaaatatgcgttcttcctttaacaatcttagacaaggtaccaaatatgtgttagagtatttcattgaaatg 25227026  T
Q  566 aaagcgttatgggaagaa 583  Q
    ||||| ||||||||||||    
T  25227027 aaagctttatgggaagaa 25227044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 347 - 413
Target Start/End: Complemental strand, 19588571 - 19588505
Alignment:
Q  347 tgggaacgttgcaaccatttggttcaatcttggctcatcaatttcgtttcagattctattgctcaaa 413  Q
    |||||||| |||||||||||||| ||||||||||| || |||| |||||| ||||| ||||||||||    
T  19588571 tgggaacgatgcaaccatttggtacaatcttggcttattaattccgtttctgattcaattgctcaaa 19588505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 651 - 708
Target Start/End: Original strand, 25571626 - 25571683
Alignment:
Q  651 ttgctaagatttacagaactgaggatcaaatcatgcagtttttgactagtttgaatga 708  Q
    |||||||| ||||||||||  ||||||||||||| |||||||||||| ||||||||||    
T  25571626 ttgctaagctttacagaaccaaggatcaaatcattcagtttttgactggtttgaatga 25571683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 347 - 413
Target Start/End: Original strand, 12283720 - 12283786
Alignment:
Q  347 tgggaacgttgcaaccatttggttcaatcttggctcatcaatttcgtttcagattctattgctcaaa 413  Q
    |||||||| |||||||||||||| |||||||||||||| ||||  ||||  ||||| ||||||||||    
T  12283720 tgggaacgatgcaaccatttggtacaatcttggctcattaattcagtttttgattcaattgctcaaa 12283786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 245 - 387
Target Start/End: Complemental strand, 34503900 - 34503758
Alignment:
Q  245 tggaatcgttccatgaagcgttctctaggcacgaagaacaagcttggattcaccaatggctccattgaacaacctgatcttgatgatcttaaccggtctg 344  Q
    ||||||| ||||||||||||| || || | |||||||||||  ||||||||| |||||| ||||||     |||||||||||| |||||||| ||   ||    
T  34503900 tggaatcattccatgaagcgtgctttaagaacgaagaacaaaattggattcatcaatggttccattcccacacctgatcttgaagatcttaatcgcaatg 34503801  T
Q  345 catgggaacgttgcaaccatttggttcaatcttggctcatcaa 387  Q
    | | ||||| ||| || || |||||||||| |||||| |||||    
T  34503800 cttaggaacattgtaatcacttggttcaatattggcttatcaa 34503758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 342 - 539
Target Start/End: Complemental strand, 49728386 - 49728189
Alignment:
Q  342 ctgcatgggaacgttgcaaccatttggttcaatcttggctcatcaatttcgtttcagattctattgctcaaattgttgtcttctttgtcattgcatatga 441  Q
    |||| |||||||||||||| ||  | ||||||||||||||||||||||  ||||| ||||| || || ||||   |||| |||| ||  | ||||  |||    
T  49728386 ctgcttgggaacgttgcaatcaccttgttcaatcttggctcatcaattcagtttctgattccatcgcgcaaaccattgttttctgtgatactgcacttga 49728287  T
Q  442 ggtatggcaagatctccatgaaagtttctctaaggttgatcgcattcgtattacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaat 539  Q
    ||| ||||  ||  |  | ||| |||||| |||  ||||||||||||| ||| ||||| |||||||||| || |||||| | ||||| ||||||||||    
T  49728286 ggtttggcttgacttgaaagaacgtttctttaaaattgatcgcattcgcattgcaaatatgcgttcttcaatcaacaatctcaaacagggtgcaaaat 49728189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 347 - 413
Target Start/End: Original strand, 52776100 - 52776166
Alignment:
Q  347 tgggaacgttgcaaccatttggttcaatcttggctcatcaatttcgtttcagattctattgctcaaa 413  Q
    |||||||| |||||||||||||| |||||||||||||| ||||  ||||| ||||| ||||||||||    
T  52776100 tgggaacgatgcaaccatttggtacaatcttggctcattaattcagtttctgattcaattgctcaaa 52776166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 344 - 757
Target Start/End: Original strand, 2358144 - 2358557
Alignment:
Q  344 gcatgggaacgttgcaaccatttggttcaatcttggctcatcaatttcgtttcagattctattgctcaaattgttgtcttctttgtcattgcatatgagg 443  Q
    ||||||||||| || || |||||||||||||||||||| ||||| |  ||||| || || |||||||||| | |||| || | ||    ||||  |||||    
T  2358144 gcatgggaacgctgtaatcatttggttcaatcttggcttatcaactctgtttctgagtccattgctcaaactattgttttttgtgattctgcacttgagg 2358243  T
Q  444 tatggcaagatctccatgaaagtttctctaaggttgatcgcattcgtattacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaatatgt 543  Q
    | ||||  ||| |  | ||| | ||||| ||  ||||||| ||||| ||| ||||||| ||||||   || || ||||||||||||||  |||||| |||    
T  2358244 tttggcttgatttgaaagaacgattctccaaaattgatcgtattcgcattgcaaatttacgttctaacatcaataatttgaaacaaggatcaaaatttgt 2358343  T
Q  544 tcttgagtattttactgaattgaaagcgttatgggaagaactttcaccacatagaccaattccatcttgtatttgtgttcatgcttgccattgtgatgct 643  Q
    | | || ||||| |||||| | ||  | |||||||| ||| | ||  |||||||||| || ||   ||||  |||| ||||| |||| | ||||| |||     
T  2358344 tttggattatttcactgaaataaagtccttatgggaggaattatcttcacatagacctatccctaattgttcttgtattcatccttgtcgttgtgctgca 2358443  T
Q  644 actagggttgctaagatttacagaactgaggatcaaatcatgcagtttttgactagtttgaatgataattttggggttgttaagactcaagttcttcttc 743  Q
     |||  |||||||||||| | |||| ||||||||| || ||||| ||| | ||  | ||||||||| | |||   || ||||  |||||||||||||| |    
T  2358444 tctaaagttgctaagattcatagaaatgaggatcagattatgcaatttcttacaggattgaatgatcaattttctgtggttagaactcaagttcttctcc 2358543  T
Q  744 ttgatcctcttcct 757  Q
    ||||||||||||||    
T  2358544 ttgatcctcttcct 2358557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 347 - 519
Target Start/End: Original strand, 29497877 - 29498049
Alignment:
Q  347 tgggaacgttgcaaccatttggttcaatcttggctcatcaatttcgtttcagattctattgctcaaattgttgtcttctttgtcattgcatatgaggtat 446  Q
    |||||||| ||||||||| |||| ||||||||||| |  ||||| ||||| ||||  |||||||||| | |||| |||| ||  | ||| | ||| || |    
T  29497877 tgggaacgatgcaaccatgtggtacaatcttggcttactaattttgtttctgatttcattgctcaaactattgttttctatgatactgcctttgatgttt 29497976  T
Q  447 ggcaagatctccatgaaagtttctctaaggttgatcgcattcgtattacaaatttgcgttcttctattaacaa 519  Q
    |||| ||||| || ||||| || |||||||||||||| || || ||| | ||| |||||||| | ||||||||    
T  29497977 ggcatgatctgcaagaaagattttctaaggttgatcgtatacgcattgctaatctgcgttctaccattaacaa 29498049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 368 - 587
Target Start/End: Complemental strand, 34893345 - 34893126
Alignment:
Q  368 gttcaatcttggctcatcaatttcgtttcagattctattgctcaaattgttgtcttctttgtcattgcatatgaggtatggcaagatctccatgaaagtt 467  Q
    ||||||||||||| ||||||||  |||||  |||||||||| ||||   | |||||   || || ||| | ||| || |||||||||||| |  || | |    
T  34893345 gttcaatcttggcccatcaattatgtttctaattctattgcgcaaacgatcgtctttcatgacactgcctttgatgtttggcaagatctcaacaaatgat 34893246  T
Q  468 tctctaaggttgatcgcattcgtattacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttgagtattttactgaattgaa 567  Q
    | ||||| |||||||| ||||| ||| ||||| | ||||| || ||||||||  | || |||||| | |||| |||  | ||||||||||||||||||||    
T  34893245 tttctaaagttgatcgtattcgcattgcaaatctacgttcctccattaacaacctcaagcaaggttccaaatctgtcttagagtattttactgaattgaa 34893146  T
Q  568 agcgttatgggaagaacttt 587  Q
    |||  | |||||||||||||    
T  34893145 agctctttgggaagaacttt 34893126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 503 - 549
Target Start/End: Original strand, 13129139 - 13129185
Alignment:
Q  503 cgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttga 549  Q
    |||||||| ||||||||||||||||||||||  |||| |||||||||    
T  13129139 cgttcttccattaacaatttgaaacaaggtgataaatctgttcttga 13129185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 719 - 805
Target Start/End: Complemental strand, 20485189 - 20485103
Alignment:
Q  719 gttgttaagactcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataat 805  Q
    ||||| |||||||||||||||||| | ||||| |||||| |  |||| |||||||| ||| | || || ||||||||||| ||||||    
T  20485189 gttgtgaagactcaagttcttcttatggatccacttccttcaatcaacaaggtttattctatggttgttcaagaagaaagtaataat 20485103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 719 - 805
Target Start/End: Original strand, 28016002 - 28016088
Alignment:
Q  719 gttgttaagactcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataat 805  Q
    ||||| |||||||||||||||||| | ||||| |||||| |  |||| |||||||| ||| | || || ||||||||||| ||||||    
T  28016002 gttgtgaagactcaagttcttcttatggatccacttccttcaatcaacaaggtttattctatggttgttcaagaagaaagtaataat 28016088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 342 - 411
Target Start/End: Original strand, 8309856 - 8309925
Alignment:
Q  342 ctgcatgggaacgttgcaaccatttggttcaatcttggctcatcaatttcgtttcagattctattgctca 411  Q
    ||||||||||||| ||||| ||| | ||||||||||||||||| || || ||||| ||||| ||| ||||    
T  8309856 ctgcatgggaacggtgcaatcatctcgttcaatcttggctcattaactttgtttctgattcaatttctca 8309925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 347 - 413
Target Start/End: Original strand, 9429 - 9495
Alignment:
Q  347 tgggaacgttgcaaccatttggttcaatcttggctcatcaatttcgtttcagattctattgctcaaa 413  Q
    |||||||| |||||||||||||| |||||||||||||| ||||  || || ||||| ||||||||||    
T  9429 tgggaacgatgcaaccatttggtacaatcttggctcattaattcagtctctgattcaattgctcaaa 9495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 344 - 387
Target Start/End: Original strand, 188136 - 188179
Alignment:
Q  344 gcatgggaacgttgcaaccatttggttcaatcttggctcatcaa 387  Q
    ||||||||||| ||||| |||||||||||||||||||| |||||    
T  188136 gcatgggaacgatgcaatcatttggttcaatcttggcttatcaa 188179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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