View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0122_high_11 (Length: 251)
Name: NF0122_high_11
Description: NF0122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0122_high_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 113 - 227
Target Start/End: Complemental strand, 5921846 - 5921732
Alignment:
| Q |
113 |
cattgattcttcttcaccatggctcctcgtaatcaaggtcctgatcaagaatctccattttacgtgcatccaagtgaaggtccttcatctttaatcgttt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
5921846 |
cattgattcttcttcaccatggctcctcgtaatcaaggtcctgatcaagaatctccatttcacgtgaatccaagtgaaggtccttcatctttaattgttt |
5921747 |
T |
|
| Q |
213 |
ctcctaagcttgatg |
227 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
5921746 |
ctcctaagcttgatg |
5921732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 5921957 - 5921913
Alignment:
| Q |
2 |
tgattgcttcgtcttcaagcttcgttctctgtgtatttgttgctt |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5921957 |
tgattgcttcgtcttcaagcttcgttctctatgtatttgttgctt |
5921913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 20326145 - 20326034
Alignment:
| Q |
116 |
tgattcttcttcaccatggctcctcgtaatcaaggtcctgatcaagaatctccattttacgtgcatccaagtgaaggtccttcatctttaatcgtttctc |
215 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
20326145 |
tgattcttcttcaccatgcctcctcgtaatcaaggtcctgatcaagaatctcctttttacgttcatccaagtgaaggtccttcatcgttaatcgtttctc |
20326046 |
T |
|
| Q |
216 |
ctaagcttgatg |
227 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
20326045 |
ctaaacttgatg |
20326034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 20326214 - 20326168
Alignment:
| Q |
1 |
ttgattgcttcgtcttcaagcttcgttctctgtgtatttgttgcttc |
47 |
Q |
| |
|
||||||||||||||||||||||| ||| |||| | |||||||||||| |
|
|
| T |
20326214 |
ttgattgcttcgtcttcaagctttgttttctgagaatttgttgcttc |
20326168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1907 times since January 2019
Visitors: 1433