View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0122_high_22 (Length: 203)
Name: NF0122_high_22
Description: NF0122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0122_high_22 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 25 - 188
Target Start/End: Complemental strand, 36896952 - 36896789
Alignment:
| Q |
25 |
ttcttctggttcaaagaaaggaagaggtgggtcagttcaacattctcaaccacctaggtgtcaagttgaaggatgtaaactagatctgactgatgctaaa |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36896952 |
ttcttctggttcaaagaaaggaagaggtgggtcagttcaacattctcaaccacctaggtgtcaagttgaaggatgtaaactagatctgactgatgctaaa |
36896853 |
T |
|
| Q |
125 |
gcttactattctagacacaaagtttgtagcatgcactctaaatcccctactgttactgtctctg |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36896852 |
gcttactattctagacacaaagtttgtagcatgcactctaaatcccctactgttactgtttctg |
36896789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 74 - 178
Target Start/End: Complemental strand, 22682327 - 22682223
Alignment:
| Q |
74 |
ccacctaggtgtcaagttgaaggatgtaaactagatctgactgatgctaaagcttactattctagacacaaagtttgtagcatgcactctaaatccccta |
173 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||| || |||||| ||||| ||||||||||| ||||||||| ||||||| || ||||| ||| |
|
|
| T |
22682327 |
ccacctaggtgtcaagttgaaggttgtaaagtagatctgagtggtgctaaggcttattattctagacataaagtttgttgcatgcattcaaaatctcctt |
22682228 |
T |
|
| Q |
174 |
ctgtt |
178 |
Q |
| |
|
||||| |
|
|
| T |
22682227 |
ctgtt |
22682223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1810 times since January 2019
Visitors: 1430