View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0122_high_4 (Length: 411)

Name: NF0122_high_4
Description: NF0122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0122_high_4
NF0122_high_4
[»] chr3 (1 HSPs)
chr3 (8-323)||(25708403-25708718)
[»] chr5 (20 HSPs)
chr5 (8-314)||(31475751-31476057)
chr5 (8-314)||(40843133-40843439)
chr5 (8-318)||(31407232-31407533)
chr5 (8-314)||(31643690-31643996)
chr5 (223-318)||(31279510-31279605)
chr5 (250-314)||(31395734-31395798)
chr5 (18-129)||(31284877-31284988)
chr5 (8-311)||(31317336-31317639)
chr5 (178-311)||(31332177-31332310)
chr5 (178-311)||(31368550-31368683)
chr5 (178-311)||(31380962-31381095)
chr5 (195-311)||(31329902-31330018)
chr5 (223-318)||(31284688-31284783)
chr5 (8-67)||(31368794-31368853)
chr5 (205-311)||(31378684-31378790)
chr5 (8-318)||(31493942-31494243)
chr5 (157-318)||(31416505-31416666)
chr5 (8-68)||(31279295-31279355)
chr5 (274-318)||(31288457-31288501)
chr5 (8-56)||(31505706-31505754)


Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 8 - 323
Target Start/End: Complemental strand, 25708718 - 25708403
Alignment:
Q  8 tagcataggcagcacatgaaatgaggctataagcatctggtttctcattcaccactttatcatatataaaagaataaactgaggtgagggtcaaaacaaa 107  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25708718 tagcaaaggcagcacatgaaatgaggctataagcatctggtttctcattcaccactttatcatatataaaagaataaactgaggtgagggtcaaaacaaa 25708619  T
Q  108 aaaggcggtatgagctttgaactacagacctctggatgattgccatacctttggatacaaaatcataagacagattatgaaacttataacactgtaaaga 207  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25708618 aaaggcggtatgagctttgaacttcagacctctggatgattgccatacctttggatacaaaatcataagacagattatgaaacttataacactgtaaaga 25708519  T
Q  208 attatctttgacaagttccactcaccaaacagatagttaaatgaagagctgagagcataacagactagtccaacaatagctgaagcaaaaccaacaaatc 307  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25708518 attatctttgacaagttccactcaccaaacagataattaaatgaagagctgagagcataacagactagtccaacaatagctgaagcaaaaccaacaaatc 25708419  T
Q  308 tccatactttttcctg 323  Q
    ||||||||||||||||    
T  25708418 tccatactttttcctg 25708403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 8 - 314
Target Start/End: Original strand, 31475751 - 31476057
Alignment:
Q  8 tagcataggcagcacatgaaatgaggctataagcatctggtttctcattcaccactttatcatatataaaagaataaactgaggtgagggtcaaaacaaa 107  Q
    ||||| |||||||||| ||||||||||||||||||||||||||  |||| |||||||||||  |   ||| ||||| || |||||||  ||||| || ||    
T  31475751 tagcaaaggcagcacaagaaatgaggctataagcatctggttttccatttaccactttatcgaagtaaaatgaatagacagaggtgattgtcaatactaa 31475850  T
Q  108 aaaggcggtatgagctttgaactacagacctctggatgattgccatacctttggatacaaaatcataagacagattatgaaacttataacactgtaaaga 207  Q
    ||| || |||||||||||||||   |||| ||| ||   || |||||  |||  |||||||||||| |  || || |||||||| | |||| ||||||||    
T  31475851 aaaagctgtatgagctttgaaccgaagacttctagactgtttccatatattttcatacaaaatcatgatgcaaatgatgaaactgaaaacagtgtaaaga 31475950  T
Q  208 attatctttgacaagttccactcaccaaacagatagttaaatgaagagctgagagcataacagactagtccaacaatagctgaagcaaaaccaacaaatc 307  Q
    ||||||||  |||| ||||| |  ||||| ||||||||||| |||||||| ||||||||||| |  |||||||||  |||||||||||| || |||||||    
T  31475951 attatcttcaacaaattccagtttccaaatagatagttaaaggaagagcttagagcataacaaagcagtccaacagcagctgaagcaaagcccacaaatc 31476050  T
Q  308 tccatac 314  Q
    |||||||    
T  31476051 tccatac 31476057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 8 - 314
Target Start/End: Original strand, 40843133 - 40843439
Alignment:
Q  8 tagcataggcagcacatgaaatgaggctataagcatctggtttctcattcaccactttatcatatataaaagaataaactgaggtgagggtcaaaacaaa 107  Q
    ||||| |||||||||| ||||||||||||||||||||||||||  |||| |||||||||||  |   ||| ||||| || |||||||  ||||| || ||    
T  40843133 tagcaaaggcagcacaagaaatgaggctataagcatctggttttccatttaccactttatcgaagtaaaacgaatagacagaggtgattgtcaatactaa 40843232  T
Q  108 aaaggcggtatgagctttgaactacagacctctggatgattgccatacctttggatacaaaatcataagacagattatgaaacttataacactgtaaaga 207  Q
    ||| || |||||||||||||||   |||| ||| ||   || |||||  |||  |||||||||||| |  || || |||||||| | |||| ||||||||    
T  40843233 aaaagctgtatgagctttgaaccgaagacttctagactgtttccatatattttcatacaaaatcatgatgcaaatgatgaaactgaaaacagtgtaaaga 40843332  T
Q  208 attatctttgacaagttccactcaccaaacagatagttaaatgaagagctgagagcataacagactagtccaacaatagctgaagcaaaaccaacaaatc 307  Q
    ||||||||  |||| ||||| |  ||||| |||||||| || |||||||| ||||||||||| || |||||||||  |||||||||||| || |||||||    
T  40843333 attatcttcaacaaattccaatttccaaatagatagttgaaggaagagcttagagcataacaaaccagtccaacagcagctgaagcaaatcccacaaatc 40843432  T
Q  308 tccatac 314  Q
    |||||||    
T  40843433 tccatac 40843439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 318
Target Start/End: Original strand, 31407232 - 31407533
Alignment:
Q  8 tagcataggcagcacatgaaatgaggctataagcatctggtttctcattcaccactttatcatatataaaagaataaactgaggtgagggtcaaaacaaa 107  Q
    ||||| |||| ||||||||||| | |||||| |||||||||||  ||||||||||||||||| | | ||| ||||| || |||||||  ||||| || ||    
T  31407232 tagcaaaggcggcacatgaaatcaagctatatgcatctggttttccattcaccactttatcaaagaaaaatgaatagacagaggtgattgtcaatactaa 31407331  T
Q  108 aaaggcggtatgagctttgaactacagacctctggatgattgccatacctttggatacaaaatcataagacagattatgaaacttataacactgtaaaga 207  Q
    ||| || |||||||||||||||   |||| ||| ||   || |||||  |||| ||||||||||         || |||||||| | || | ||||||||    
T  31407332 aaaagctgtatgagctttgaaccgaagacttctagagtttttccatatatttgcatacaaaatc---------atgatgaaactgaaaagagtgtaaaga 31407422  T
Q  208 attatctttgacaagttccactcaccaaacagatagttaaatgaagagctgagagcataacagactagtccaacaatagctgaagcaaaaccaacaaatc 307  Q
    | ||||||  |||| ||||| |  ||||| |||| ||| || |||| |||||||||||||||||  | |||||||  |||||||||||| || |||||||    
T  31407423 aatatcttcaacaaattccaatttccaaatagatggttgaaggaagtgctgagagcataacagagcaatccaacagcagctgaagcaaagcccacaaatc 31407522  T
Q  308 tccatactttt 318  Q
    |||| ||||||    
T  31407523 tccacactttt 31407533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 8 - 314
Target Start/End: Original strand, 31643690 - 31643996
Alignment:
Q  8 tagcataggcagcacatgaaatgaggctataagcatctggtttctcattcaccactttatcatatataaaagaataaactgaggtgagggtcaaaacaaa 107  Q
    ||||| ||| |||||| |||||||||||||| |||||||||||  ||||||||||||||||| | | ||| ||||| |  || ||||  || || || ||    
T  31643690 tagcaaaggaagcacaagaaatgaggctatatgcatctggttttccattcaccactttatcaaagaaaaatgaatataacgaagtgattgttaataccaa 31643789  T
Q  108 aaaggcggtatgagctttgaactacagacctctggatgattgccatacctttggatacaaaatcataagacagattatgaaacttataacactgtaaaga 207  Q
    | | || || || ||||||||    | || ||| || | |||||| |  |||| | | |||||||| || | ||| |||||||| | ||| ||||||||     
T  31643790 atatgctgtgtgtgctttgaatcgaatacttcttgagggttgccacatttttgcaaataaaatcatgaggctgatgatgaaactgaaaacgctgtaaagg 31643889  T
Q  208 attatctttgacaagttccactcaccaaacagatagttaaatgaagagctgagagcataacagactagtccaacaatagctgaagcaaaaccaacaaatc 307  Q
    |  |||||  |||  ||||| || ||||| |||||||| || |||||||| ||||||||||| | |||||||||||||| ||||||||| || |||||||    
T  31643890 aaaatcttcaacagattccaatctccaaatagatagttgaaggaagagctaagagcataacaaagtagtccaacaatagatgaagcaaagcccacaaatc 31643989  T
Q  308 tccatac 314  Q
    |||||||    
T  31643990 tccatac 31643996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 223 - 318
Target Start/End: Original strand, 31279510 - 31279605
Alignment:
Q  223 ttccactcaccaaacagatagttaaatgaagagctgagagcataacagactagtccaacaatagctgaagcaaaaccaacaaatctccatactttt 318  Q
    ||||| || ||||| |||||||| || |||||||||||||||||||| || |||||||||| | |||||||||| || ||||||||||| ||||||    
T  31279510 ttccattctccaaagagatagttgaaggaagagctgagagcataacaaaccagtccaacaacaactgaagcaaagcctacaaatctccacactttt 31279605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 250 - 314
Target Start/End: Complemental strand, 31395798 - 31395734
Alignment:
Q  250 gaagagctgagagcataacagactagtccaacaatagctgaagcaaaaccaacaaatctccatac 314  Q
    |||||||||||||||||||| || |||||||||| |||||||||| | |||||||||||||||||    
T  31395798 gaagagctgagagcataacaaacaagtccaacaacagctgaagcacatccaacaaatctccatac 31395734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 31284988 - 31284877
Alignment:
Q  18 agcacatgaaatgaggctataagcatctggtttctcattcaccactttatcatatataaaagaataaactgaggtgagggtcaaaacaaaaaaggcggta 117  Q
    ||||||||||||||||||||| |||||||||||  |||| || ||||||||| | | ||| ||||| | ||||||||  ||||| || ||||| || | |    
T  31284988 agcacatgaaatgaggctatatgcatctggttttccattaactactttatcaaagaaaaatgaatataatgaggtgattgtcaataccaaaaacgcagca 31284889  T
Q  118 tgagctttgaac 129  Q
    ||||||||||||    
T  31284888 tgagctttgaac 31284877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 311
Target Start/End: Complemental strand, 31317639 - 31317336
Alignment:
Q  8 tagcataggcagcacatgaaatgaggctataagcatctggtttctcattcaccactttatcatatataaaagaataaactgaggtgagggtcaaaacaaa 107  Q
    ||||| |||||||||||||||| |  ||||| |||||||||||| ||||||  ||||||||| | | ||| ||||| | ||| ||||| ||||| || |     
T  31317639 tagcaaaggcagcacatgaaattaaactatatgcatctggtttcccattcatgactttatcaaagaaaaaggaatagattgaagtgagtgtcaataccag 31317540  T
Q  108 aaaggcggtatgagctttgaactacagacctctggatgattgccatacctttggatacaaaatcataagacagattatgaaacttataacactgtaaaga 207  Q
    ||| || | ||||||||||||    ||||  || ||   |||| ||  ||||| | | |||||||  |  ||||| |||||||| | | | |||||||||    
T  31317539 aaatgccgaatgagctttgaatcgaagactgctagaatgttgcaatttctttgcaaataaaatcaccaagcagatgatgaaactgaaagcgctgtaaaga 31317440  T
Q  208 attatctttgacaagttccactcaccaaacagatagttaaatgaagagctgagagcataacagactagtccaacaatagctgaagcaaaaccaacaaatc 307  Q
    | ||| ||  |||| ||||| || ||||| ||||||||||| |||||||| |  ||||| || || |||||||||| || ||||||||| || |||||||    
T  31317439 aatattttcaacaaattccattctccaaagagatagttaaaggaagagcttaatgcatagcaaacaagtccaacaagagatgaagcaaagcccacaaatc 31317340  T
Q  308 tcca 311  Q
    ||||    
T  31317339 tcca 31317336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 311
Target Start/End: Complemental strand, 31332310 - 31332177
Alignment:
Q  178 cagattatgaaacttataacactgtaaagaattatctttgacaagttccactcaccaaacagatagttaaatgaagagctgagagcataacagactagtc 277  Q
    ||||| |||||||| | | ||||||| |||| ||| ||  |||| ||||| || ||||| || ||||| || |||||||| | ||||||||| |  ||||    
T  31332310 cagatgatgaaactgaaagcactgtagagaaatattttcaacaaattccattctccaaagaggtagttgaaggaagagcttaaagcataacaaagcagtc 31332211  T
Q  278 caacaatagctgaagcaaaaccaacaaatctcca 311  Q
    |||||| || ||||||||| ||||||||||||||    
T  31332210 caacaacagatgaagcaaagccaacaaatctcca 31332177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 311
Target Start/End: Complemental strand, 31368683 - 31368550
Alignment:
Q  178 cagattatgaaacttataacactgtaaagaattatctttgacaagttccactcaccaaacagatagttaaatgaagagctgagagcataacagactagtc 277  Q
    ||||| |||||||| | | | |||||||||| ||| ||  |||| || || || ||||| ||||||||||| |||||||| | |||||| || || ||||    
T  31368683 cagatgatgaaactgacagcgctgtaaagaaatattttcaacaaatttcattctccaaagagatagttaaaggaagagcttaaagcatagcaaacaagtc 31368584  T
Q  278 caacaatagctgaagcaaaaccaacaaatctcca 311  Q
    |||||| || ||||||||| || |||||||||||    
T  31368583 caacaagagatgaagcaaagcccacaaatctcca 31368550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 311
Target Start/End: Complemental strand, 31381095 - 31380962
Alignment:
Q  178 cagattatgaaacttataacactgtaaagaattatctttgacaagttccactcaccaaacagatagttaaatgaagagctgagagcataacagactagtc 277  Q
    ||||| |||||||| | | ||||||| |||| ||| ||  |||| ||||| || ||||| || || || || |||||||| | ||||||||| |  ||||    
T  31381095 cagatgatgaaactgaaagcactgtagagaaatattttcaacaaattccattctccaaagaggtaattgaaggaagagctcaaagcataacaaagcagtc 31380996  T
Q  278 caacaatagctgaagcaaaaccaacaaatctcca 311  Q
    |||||| || ||||||||| ||||||||||||||    
T  31380995 caacaacagatgaagcaaagccaacaaatctcca 31380962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 311
Target Start/End: Complemental strand, 31330018 - 31329902
Alignment:
Q  195 aacactgtaaagaattatctttgacaagttccactcaccaaacagatagttaaatgaagagctgagagcataacagactagtccaacaatagctgaagca 294  Q
    |||| ||||||||||||||||  |||| ||||| || ||||| |||||||| || ||||| ||||||||||  || |  |||||||||| ||||| || |    
T  31330018 aacagtgtaaagaattatcttgaacaaattccaatctccaaagagatagttgaaggaagaactgagagcattgcaaagcagtccaacaacagctgcagaa 31329919  T
Q  295 aaaccaacaaatctcca 311  Q
    || || | |||||||||    
T  31329918 aatcccagaaatctcca 31329902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 223 - 318
Target Start/End: Complemental strand, 31284783 - 31284688
Alignment:
Q  223 ttccactcaccaaacagatagttaaatgaagagctgagagcataacagactagtccaacaatagctgaagcaaaaccaacaaatctccatactttt 318  Q
    ||||| || ||||| |||||||| || |||||||| ||||||||||| |  ||||||| |  || ||||||||| || ||||||||||| ||||||    
T  31284783 ttccagtctccaaagagatagttgaaggaagagcttagagcataacaaagcagtccaatagcagatgaagcaaagcccacaaatctccacactttt 31284688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 31368853 - 31368794
Alignment:
Q  8 tagcataggcagcacatgaaatgaggctataagcatctggtttctcattcaccactttat 67  Q
    ||||| |||||||||||||||| || ||||| |||||||||||| ||||||  |||||||    
T  31368853 tagcaaaggcagcacatgaaattagactatatgcatctggtttcccattcatgactttat 31368794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 311
Target Start/End: Complemental strand, 31378790 - 31378684
Alignment:
Q  205 agaattatctttgacaagttccactcaccaaacagatagttaaatgaagagctgagagcataacagactagtccaacaatagctgaagcaaaaccaacaa 304  Q
    |||||||||||  |||| ||||| || ||||| |||||||| || ||||| ||||||||||  || |  |||||||||| ||||| |||||| || | ||    
T  31378790 agaattatcttgaacaaattccaatctccaaagagatagttgaaggaagaactgagagcattgcaaagcagtccaacaacagctgcagcaaatcccagaa 31378691  T
Q  305 atctcca 311  Q
    |||||||    
T  31378690 atctcca 31378684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 318
Target Start/End: Original strand, 31493942 - 31494243
Alignment:
Q  8 tagcataggcagcacatgaaatgaggctataagcatctggtttctcattcaccactttatcatatataaaagaataaactgaggtgagggtcaaaacaaa 107  Q
    ||||| ||||||||||||  || || ||||| |||||||||||  |||||||||||||| || | | ||| ||||| || |||||||  || || || |     
T  31493942 tagcaaaggcagcacatgttattagactatatgcatctggttttccattcaccactttaccaaagaaaaatgaatagacagaggtgattgttaataccag 31494041  T
Q  108 aaaggcggtatgagctttgaactacagacctctggatgattgccatacctttggatacaaaatcataagacagattatgaaacttataacactgtaaaga 207  Q
    ||| || |||||||||||||||   || | ||| ||   ||||||||  | || |||||||||||| || ||||| |||||         |||| |||||    
T  31494042 aaaagctgtatgagctttgaaccgaagccttcttgagttttgccatatatgtgcatacaaaatcatgaggcagatgatgaa---------actgaaaaga 31494132  T
Q  208 attatctttgacaagttccactcaccaaacagatagttaaatgaagagctgagagcataacagactagtccaacaatagctgaagcaaaaccaacaaatc 307  Q
    |||| |||  |||| ||||| |  ||||| |||| ||| || |||||||| ||||||||||| |  | ||||| || ||||||| |||| | ||||||||    
T  31494133 attaccttcaacaaattccaatttccaaatagatggttgaacgaagagcttagagcataacaaagcaatccaataacagctgaaacaaagctaacaaatc 31494232  T
Q  308 tccatactttt 318  Q
    |||| ||||||    
T  31494233 tccacactttt 31494243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 318
Target Start/End: Original strand, 31416505 - 31416666
Alignment:
Q  157 tttggatacaaaatcataagacagattatgaaacttataacactgtaaagaattatctttgacaagttccactcaccaaacagatagttaaatgaagagc 256  Q
    |||| |||||||||||  || ||||| ||||||||   || | | |||||||||| |||  |||| ||||| |  ||||| |||| ||| || |||||||    
T  31416505 tttgcatacaaaatcaggaggcagatgatgaaactggaaagagtataaagaattaccttcaacaaattccaatttccaaatagatggttgaaagaagagc 31416604  T
Q  257 tgagagcataacagactagtccaacaatagctgaagcaaaaccaacaaatctccatactttt 318  Q
    | ||||||||||| |  |||||||||  ||| ||| |||| || ||||||||||| ||||||    
T  31416605 ttagagcataacaaatcagtccaacagcagcggaaacaaagcctacaaatctccacactttt 31416666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 31279295 - 31279355
Alignment:
Q  8 tagcataggcagcacatgaaatgaggctataagcatctggtttctcattcaccactttatc 68  Q
    ||||| ||| |||||||||||||||||||||  |||| |||||| |||||| || ||||||    
T  31279295 tagcaaaggaagcacatgaaatgaggctatatccatcaggtttcccattcatcaatttatc 31279355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 318
Target Start/End: Complemental strand, 31288501 - 31288457
Alignment:
Q  274 agtccaacaatagctgaagcaaaaccaacaaatctccatactttt 318  Q
    |||||||||| |||||||||||| || ||||||||||| ||||||    
T  31288501 agtccaacaacagctgaagcaaagcctacaaatctccacactttt 31288457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 31505706 - 31505754
Alignment:
Q  8 tagcataggcagcacatgaaatgaggctataagcatctggtttctcatt 56  Q
    ||||| ||| ||||| ||||||||||||||| |||||||||||| ||||    
T  31505706 tagcaaaggaagcacttgaaatgaggctatatgcatctggtttcccatt 31505754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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