View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0122_low_23 (Length: 228)
Name: NF0122_low_23
Description: NF0122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0122_low_23 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 6 - 228
Target Start/End: Complemental strand, 2307822 - 2307600
Alignment:
| Q |
6 |
cccccctctctgaatgattttgtttatgtctgtgttcttttagtttttaaaactaaatagtctctttagaggttaatgattccaggcttgaatacacttc |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2307822 |
cccccctctctgaatgattttgtttatgtctgtgttcttttagtttttaaaactaaatagtctctttagaggttaatgattccaggcttgaatacacttc |
2307723 |
T |
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| Q |
106 |
tagnnnnnnnaatcattggtatctattatctccaattaaagaagagcacagtacatgtattttgtttgcacttggcacattcaatcttataaatctaata |
205 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2307722 |
tagtttttttaatcattggtatctattatctccaattaaagaagagcacagtacatgtattttgtttgcacttggcacattcaatcttataaatctaata |
2307623 |
T |
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| Q |
206 |
atgcttcaatgatctagtttgtt |
228 |
Q |
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||||||||||||||||||||||| |
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| T |
2307622 |
atgcttcaatgatctagtttgtt |
2307600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 6 - 228
Target Start/End: Complemental strand, 2317023 - 2316800
Alignment:
| Q |
6 |
cccccctctctgaatgattttgtttatgtctgtgttctttt-agtttttaaaactaaatagtctctttagaggttaatgattccaggcttgaatacactt |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2317023 |
cccccctctctgaatgattttgtttatgtctgtgttctttttagtctttaacactaaatagtctctttagacgttaatgattccaggcttgaatacactt |
2316924 |
T |
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| Q |
105 |
ctagnnnnnnnaatcattggtatctattatctccaattaaagaagagcacagtacatgtattttgtttgcacttggcacattcaatcttataaatctaat |
204 |
Q |
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|||| ||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2316923 |
ctagtttttttaatcattggcatctattatctccaattaaagaagagaacagtacgtgtattttgtttgcacttggcaaattcaatcttataaatctaat |
2316824 |
T |
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| Q |
205 |
aatgcttcaatgatctagtttgtt |
228 |
Q |
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|||||||||||||||||||||||| |
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| T |
2316823 |
aatgcttcaatgatctagtttgtt |
2316800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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