View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0122_low_28 (Length: 206)
Name: NF0122_low_28
Description: NF0122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0122_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 20 - 183
Target Start/End: Original strand, 36896789 - 36896952
Alignment:
| Q |
20 |
cagagacagtaacagtaggggatttagagtgcatgctacaaactttgtgtctagaatagtaagctttagcatcagtcagatctagtttacatccttcaac |
119 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36896789 |
cagaaacagtaacagtaggggatttagagtgcatgctacaaactttgtgtctagaatagtaagctttagcatcagtcagatctagtttacatccttcaac |
36896888 |
T |
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| Q |
120 |
ttgacacctaggtggttgagaatgttgaactgacccacctcttcctttctttgaaccagaagaa |
183 |
Q |
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| T |
36896889 |
ttgacacctaggtggttgagaatgttgaactgacccacctcttcctttctttgaaccagaagaa |
36896952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 30 - 134
Target Start/End: Original strand, 22682223 - 22682327
Alignment:
| Q |
30 |
aacagtaggggatttagagtgcatgctacaaactttgtgtctagaatagtaagctttagcatcagtcagatctagtttacatccttcaacttgacaccta |
129 |
Q |
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||||| ||| ||||| || ||||||| ||||||||| ||||||||||| ||||| |||||| || ||||||||| |||||| |||||||||||||||||| |
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| T |
22682223 |
aacagaaggagattttgaatgcatgcaacaaactttatgtctagaataataagccttagcaccactcagatctactttacaaccttcaacttgacaccta |
22682322 |
T |
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| Q |
130 |
ggtgg |
134 |
Q |
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||||| |
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| T |
22682323 |
ggtgg |
22682327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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