View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0122_low_3 (Length: 479)
Name: NF0122_low_3
Description: NF0122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0122_low_3
Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 30 - 460
Target Start/End: Complemental strand, 33860463 - 33860033
Alignment:
Q
30
catcgatcacccagccacggaggccgctcactttacatctcaagttatcatcacaaatgaccctggcctgattagaaaaggttatacacctattcttgac
129
Q
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
T
33860463
catcgatcacccagccacggaagccgctcactttacatctcaagttatcatcacaaatgaccctggcctgattagaaaaggctttacacctattcttgac
33860364
T
Q
130
tgccacacctcccacgttgctgtcatgtttgttgagcttattgccaaggttgactggttttatggtaaggaaattgagaaggagcctgaattcttgaaga
229
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
33860363
tgccacacctcccacgttgctgtcatgtttgttgagcttattgccaaggttgactggttttatggtaaggaaattgagaaggagcctgaattcttgaaga
33860264
T
Q
230
gtggtgatgctgctgctattaagatgattcccaccaagcctatggtggtagaggatttcgcttattatcctccactcggccgttttgttgcgagagacaa
329
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
33860263
gtggtgatgctgctgctattaagatgattcccaccaagcctatggtggtagaggatttcgcttattatcctccactcggccgttttgttgcgagagacag
33860164
T
Q
330
gcgtcaaactgtggcttttggcgtcatcgcgtctgtggagaggaagatcactgagtcagcattgatgaattgaatcgtgcaggatgatgatatggatgta
429
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
T
33860163
gcgtcaaactgtggcttttggcgtcatcgcgtctgtggagaggaagatcactgagtcagcattgatgaatggaatcgtgcaggatgatgatatggatgta
33860064
T
Q
430
tttgtggaaaaacaatatcagaagaggaaga
460
Q
||||||||||||||| |||||||||||||||
T
33860063
tttgtggaaaaacaacatcagaagaggaaga
33860033
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 356
Target Start/End: Complemental strand, 16231592 - 16231484
Alignment:
Q
248
ttaagatgattcccaccaagcctatggtggtagaggatttcgcttattatcctccactcggccgttttgttgcgagagacaagcgtcaaactgtggcttt
347
Q
||||||||||||| | |||||||||||||| |||| | || | | |||||| | || || ||||||| || ||||||| |||||||||||||||| |
T
16231592
ttaagatgattcctatgaagcctatggtggtggagggtatcaatgaatatccttcccttggtcgttttgctgtcagagacatgcgtcaaactgtggctgt
16231493
T
Q
348
tggcgtcat
356
Q
||| |||||
T
16231492
tggagtcat
16231484
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1 (Bit Score: 145; Significance: 4e-76; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 49 - 357
Target Start/End: Original strand, 45984363 - 45984671
Alignment:
Q
49
gaggccgctcactttacatctcaagttatcatcacaaatgaccctggcctgattagaaaaggttatacacctattcttgactgccacacctcccacgttg
148
Q
|||||||||||||||||||||| |||||||| || ||| ||||||||| |||| |||| || || |||||| ||||||||||||||||||||||| |||
T
45984363
gaggccgctcactttacatctcttgttatcattacgaatcaccctggccagattcgaaatggctacacacctgttcttgactgccacacctcccacattg
45984462
T
Q
149
ctgtcatgtttgttgagcttattgccaaggttgactggttttatggtaaggaaattgagaaggagcctgaattcttgaagagtggtgatgctgctgctat
248
Q
|||||| ||||| |||||||||| ||||||||||| ||| || |||| |||||||||||| |||||| |||| |||| |||||||||| ||| | |||
T
45984463
ctgtcaagtttgctgagcttatttccaaggttgacaggtgttctggtgaggaaattgagagggagcccaaatttttgatgagtggtgatactggtattat
45984562
T
Q
249
taagatgattcccaccaagcctatggtggtagaggatttcgcttattatcctccactcggccgttttgttgcgagagacaagcgtcaaactgtggctttt
348
Q
|||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||| |||||| || ||||||||||||| ||
T
45984563
taagatgattcccaccaagcctatggtggtagagcctttctctctatatcctccactcggccgttttgttgtcagagactggcatcaaactgtggctgtt
45984662
T
Q
349
ggcgtcatc
357
Q
|| ||||||
T
45984663
ggagtcatc
45984671
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 38 - 357
Target Start/End: Original strand, 38138519 - 38138838
Alignment:
Q
38
acccagccacggaggccgctcactttacatctcaagttatcatcacaaatgaccctggcctgattagaaaaggttatacacctattcttgactgccacac
137
Q
|||||||||||||||| ||| | |||||||| | ||||||||||| ||| | |||||| |||| ||| || |||||||||||||| |||||||||||
T
38138519
acccagccacggaggctgctaaatttacatcccgtgttatcatcacgaatcaaactggccggattcaaaatggctatacacctattctggactgccacac
38138618
T
Q
138
ctcccacgttgctgtcatgtttgttgagcttattgccaaggttgactggttttatggtaaggaaattgagaaggagcctgaattcttgaagagtggtgat
237
Q
|||||||||| |||||| ||||| | ||||| || ||||| ||||| |||||| |||| |||||| ||||||||||| |||||||||||| |||||||
T
38138619
ctcccacgttcctgtcaagtttgctaagcttgttaccaagtttgacaggttttctggtttggaaatcgagaaggagcccaaattcttgaagaatggtgat
38138718
T
Q
238
gctgctgctattaagatgattcccaccaagcctatggtggtagaggatttcgcttattatcctccactcggccgttttgttgcgagagacaagcgtcaaa
337
Q
|||| || | |||||||||||||||||||| | ||||||||||||||||| || |||||||||||| |||||||||| || ||||||| ||||||||
T
38138719
gctggtgttgttaagatgattcccaccaagtccatggtggtagaggatttttctacttatcctccacttggccgttttgctgtcagagacatgcgtcaaa
38138818
T
Q
338
ctgtggcttttggcgtcatc
357
Q
|||||||| |||| ||||||
T
38138819
ctgtggctgttggagtcatc
38138838
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 38 - 357
Target Start/End: Original strand, 43067370 - 43067689
Alignment:
Q
38
acccagccacggaggccgctcactttacatctcaagttatcatcacaaatgaccctggcctgattagaaaaggttatacacctattcttgactgccacac
137
Q
||||||||| |||||| ||| |||||||||||||||| ||||| | ||| ||||||||| |||| |||| || ||| | ||| ||||||||||||||||
T
43067370
acccagccaaggaggctgctaactttacatctcaagtgatcataatgaatcaccctggccagattggaaatggctatgcccctgttcttgactgccacac
43067469
T
Q
138
ctcccacgttgctgtcatgtttgttgagcttattgccaaggttgactggttttatggtaaggaaattgagaaggagcctgaattcttgaagagtggtgat
237
Q
||||||| ||||||||| ||||| ||||||| || | ||| |||| || || ||||||||| |||||||||||||| |||||||||||| ||| |||
T
43067470
ctcccacattgctgtcaagtttgctgagcttgttactaagattgataggcgttctggtaaggagattgagaaggagcccaaattcttgaagaatggcgat
43067569
T
Q
238
gctgctgctattaagatgattcccaccaagcctatggtggtagaggatttcgcttattatcctccactcggccgttttgttgcgagagacaagcgtcaaa
337
Q
|||| | |||||||||||||||||||||||| |||||||| ||| |||| || | |||||||||||||||||||||| || ||||||| ||||||||
T
43067570
gctggtattattaagatgattcccaccaagcccatggtggttgagactttctctgaatatcctccactcggccgttttgctgttagagacatgcgtcaaa
43067669
T
Q
338
ctgtggcttttggcgtcatc
357
Q
|||||||| |||||||||||
T
43067670
ctgtggctgttggcgtcatc
43067689
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 38 - 375
Target Start/End: Complemental strand, 43044621 - 43044284
Alignment:
Q
38
acccagccacggaggccgctcactttacatctcaagttatcatcacaaatgaccctggcctgattagaaaaggttatacacctattcttgactgccacac
137
Q
||||||||| |||||| ||| |||||||||||||||| ||||| | ||| ||||||||| |||| |||| || ||| | ||| ||||||||||||||||
T
43044621
acccagccaaggaggctgctaactttacatctcaagtgatcataatgaatcaccctggccagattggaaatggctatgcccctgttcttgactgccacac
43044522
T
Q
138
ctcccacgttgctgtcatgtttgttgagcttattgccaaggttgactggttttatggtaaggaaattgagaaggagcctgaattcttgaagagtggtgat
237
Q
||||||| ||||||||| ||||| ||||||| || | ||| |||| || || ||||||||| |||||||||||||| |||||||||||| ||| |||
T
43044521
ctcccacattgctgtcaagtttgctgagcttgttactaagattgataggcgttctggtaaggagattgagaaggagcccaaattcttgaagaatggcgat
43044422
T
Q
238
gctgctgctattaagatgattcccaccaagcctatggtggtagaggatttcgcttattatcctccactcggccgttttgttgcgagagacaagcgtcaaa
337
Q
|||| | |||||||||||||||||||||||| |||||||| ||| |||| || | |||||||||||||||||||||| || ||||||| ||||||||
T
43044421
gctggtattattaagatgattcccaccaagcccatggtggttgagactttctctgaatatcctccactcggccgttttgctgttagagacatgcgtcaaa
43044322
T
Q
338
ctgtggcttttggcgtcatcgcgtctgtggagaggaag
375
Q
|||||||| |||| |||||| | ||||||||| ||||
T
43044321
ctgtggctgttggggtcatcaaggctgtggagaagaag
43044284
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 38 - 357
Target Start/End: Complemental strand, 43083465 - 43083146
Alignment:
Q
38
acccagccacggaggccgctcactttacatctcaagttatcatcacaaatgaccctggcctgattagaaaaggttatacacctattcttgactgccacac
137
Q
||||||||| ||| || ||| |||||||||||||||| ||||||| ||| ||||||||| |||| |||| || ||| | ||| ||||||||||||||||
T
43083465
acccagccaaggaagctgctaactttacatctcaagtgatcatcatgaatcaccctggccagattggaaatggctatgcccctgttcttgactgccacac
43083366
T
Q
138
ctcccacgttgctgtcatgtttgttgagcttattgccaaggttgactggttttatggtaaggaaattgagaaggagcctgaattcttgaagagtggtgat
237
Q
||||||| ||||||||| ||||| ||||||| || | ||| |||| || || ||||||||| |||||||||||||| |||||||||||| ||| |||
T
43083365
ctcccacattgctgtcaagtttgctgagcttgttactaagattgataggcgttctggtaaggagattgagaaggagcccaaattcttgaagaatggcgat
43083266
T
Q
238
gctgctgctattaagatgattcccaccaagcctatggtggtagaggatttcgcttattatcctccactcggccgttttgttgcgagagacaagcgtcaaa
337
Q
|||| | |||||||||||||||||||||||| |||||||| ||| |||| || | |||||||||||||| ||||||| || ||||||| ||||||||
T
43083265
gctggtattattaagatgattcccaccaagcccatggtggttgagactttctctgaatatcctccactcggtcgttttgctgttagagacatgcgtcaaa
43083166
T
Q
338
ctgtggcttttggcgtcatc
357
Q
|||||||| |||||||||||
T
43083165
ctgtggctgttggcgtcatc
43083146
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 38 - 375
Target Start/End: Complemental strand, 3300355 - 3300018
Alignment:
Q
38
acccagccacggaggccgctcactttacatctcaagttatcatcacaaatgaccctggcctgattagaaaaggttatacacctattcttgactgccacac
137
Q
|||| |||| |||||| ||| |||||||||||||||| ||||| | ||| ||||||||| |||| |||| || ||| | ||| ||||||||||||||||
T
3300355
accctgccaaggaggctgctaactttacatctcaagtgatcattatgaatcaccctggccagattggaaatggctatgcccctgttcttgactgccacac
3300256
T
Q
138
ctcccacgttgctgtcatgtttgttgagcttattgccaaggttgactggttttatggtaaggaaattgagaaggagcctgaattcttgaagagtggtgat
237
Q
||||||| ||||||||| |||| ||||||| || | ||| ||||| || || ||| ||||| |||||||||||||| |||||||||||| ||||||
T
3300255
ctcccacattgctgtcaaatttgctgagcttgttactaagattgacaggcgttctggaaaggagattgagaaggagcccaaattcttgaagaacggtgat
3300156
T
Q
238
gctgctgctattaagatgattcccaccaagcctatggtggtagaggatttcgcttattatcctccactcggccgttttgttgcgagagacaagcgtcaaa
337
Q
|||| | |||||||||||||||||||||||| |||||||| ||| |||| || | ||||||||||| |||||||| | || || || | |||||| |
T
3300155
gctggtattattaagatgattcccaccaagcccatggtggttgagactttctctgagtatcctccacttggccgtttcgctgtcagggatatgcgtcaga
3300056
T
Q
338
ctgtggcttttggcgtcatcgcgtctgtggagaggaag
375
Q
|||||||| |||| |||||| | ||||||||| ||||
T
3300055
ctgtggctgttggtgtcatcaaggctgtggagaagaag
3300018
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 38 - 369
Target Start/End: Original strand, 43077247 - 43077578
Alignment:
Q
38
acccagccacggaggccgctcactttacatctcaagttatcatcacaaatgaccctggcctgattagaaaaggttatacacctattcttgactgccacac
137
Q
||||||||| |||||||||| |||||||||||||||| || ||| ||| |||||||| |||| ||| || ||| ||||| ||||| ||||||||||
T
43077247
acccagccaaggaggccgctaactttacatctcaagtcgtcgtcatgaatcaccctggcaagattgaaaatggctatgcacctgttcttcactgccacac
43077346
T
Q
138
ctcccacgttgctgtcatgtttgttgagcttattgccaaggttgactggttttatggtaaggaaattgagaaggagcctgaattcttgaagagtggtgat
237
Q
|| |||| || ||||| ||||| ||||||| || ||||| |||| || || ||||| || ||||||| | |||| ||||| ||| || |||||||
T
43077347
cttccacattcttgtcaagtttgatgagcttgttaccaagattgataggcgttctggtatggtgattgagacgaagcccaaattcctgatgaatggtgat
43077446
T
Q
238
gctgctgctattaagatgattcccaccaagcctatggtggtagaggatttcgcttattatcctccactcggccgttttgttgcgagagacaagcgtcaaa
337
Q
|||| | |||||||||||||||||||||||| |||||||| ||| |||| || | ||||||||||| ||||||||| | || |||||||||||||
T
43077447
gctggtattattaagatgattcccaccaagcccatggtggttgagactttctctgaatatcctccacttggccgttttactatcagggacaagcgtcaaa
43077546
T
Q
338
ctgtggcttttggcgtcatcgcgtctgtggag
369
Q
|||||||| |||| |||||| || ||||||||
T
43077547
ctgtggctgttggtgtcatcacggctgtggag
43077578
T
Back To:
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 39 - 357
Target Start/End: Original strand, 7891612 - 7891930
Alignment:
Q
39
cccagccacggaggccgctcactttacatctcaagttatcatcacaaatgaccctggcctgattagaaaaggttatacacctattcttgactgccacacc
138
Q
|||||| | |||||| ||| | ||||||||||| ||||||||| ||| | ||||||| ||||||||| || |||||||||||||| ||||||||||||
T
7891612
cccagctatggaggctgctgaatttacatctcatgttatcatcttgaatcatcctggccagattagaaatggctatacacctattctcgactgccacacc
7891711
T
Q
139
tcccacgttgctgtcatgtttgttgagcttattgccaaggttgactggttttatggtaaggaaattgagaaggagcctgaattcttgaagagtggtgatg
238
Q
|||||| ||||||||| ||||| ||||| || |||| ||||| || | | | ||| ||||||||||||| |||||||||||| ||| ||||
T
7891712
tcccacattgctgtcaagtttgccaagcttgttagcaagtttgacaggaatactaatgttgaatttgagaaggagcccaaattcttgaagaatggcgatg
7891811
T
Q
239
ctgctgctattaagatgattcccaccaagcctatggtggtagaggatttcgcttattatcctccactcggccgttttgttgcgagagacaagcgtcaaac
338
Q
||| | |||||||||||||||||||||||| |||||||||||| ||| || |||||| |||| || ||||||| || ||||||| |||||||||
T
7891812
ctggtattattaagatgattcccaccaagcccatggtggtagagacttttactgcatatccttcacttggtcgttttgctgtcagagacatgcgtcaaac
7891911
T
Q
339
tgtggcttttggcgtcatc
357
Q
||||||| |||| ||||||
T
7891912
tgtggctattggagtcatc
7891930
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 198 - 357
Target Start/End: Complemental strand, 50911902 - 50911743
Alignment:
Q
198
ggaaattgagaaggagcctgaattcttgaagagtggtgatgctgctgctattaagatgattcccaccaagcctatggtggtagaggatttcgcttattat
297
Q
|||||||||||||||||| |||||||||||| |||||| |||| || |||| ||||||||||||||||||| ||| |||||||| ||| | | | |
T
50911902
ggaaattgagaaggagcccaaattcttgaagaatggtgacgctggtgttattgagatgattcccaccaagcccatgttggtagagactttttccaaattt
50911803
T
Q
298
cctccactcggccgttttgttgcgagagacaagcgtcaaactgtggcttttggcgtcatc
357
Q
||| ||||||||||||||| || ||||||| |||||||||||||||| |||| ||||||
T
50911802
ccttcactcggccgttttgctgtcagagacatgcgtcaaactgtggctgttggagtcatc
50911743
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 154
Target Start/End: Original strand, 40035429 - 40035471
Alignment:
Q
112
tatacacctattcttgactgccacacctcccacgttgctgtca
154
Q
|||||||||||| |||||||||||||||||||| || ||||||
T
40035429
tatacacctattgttgactgccacacctcccacattcctgtca
40035471
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 35 - 350
Target Start/End: Complemental strand, 16348771 - 16348456
Alignment:
Q
35
atcacccagccacggaggccgctcactttacatctcaagttatcatcacaaatgaccctggcctgattagaaaaggttatacacctattcttgactgcca
134
Q
|||||||||||| ||||||| | ||||||||||||||||||||||||| ||| ||||||||| ||| ||| |||||||||||| ||||| |||||||
T
16348771
atcacccagccaaggaggccattaactttacatctcaagttatcatcacgaatcaccctggccaaattgaaaagggttatacacctgttcttaactgcca
16348672
T
Q
135
cacctcccacgttgctgtcatgtttgttgagcttattgccaaggttgactggttttatggtaaggaaattgagaaggagcctgaattcttgaagagtggt
234
Q
||||||| || ||||||||| ||||| | ||||| |||||||||| ||| |||||| ||| ||| ||||| ||||||||| |||||||||||| |||
T
16348671
cacctcctacattgctgtcaagtttgctaagcttcttgccaaggtagacaggttttctggcaagataattgtgaaggagcccaaattcttgaagaaaggt
16348572
T
Q
235
gatgctgctgctattaagatgattcccaccaagcctatggtggtagaggatttcgcttattatcctccactcggccgttttgttgcgagagacaagcgtc
334
Q
|||| || |||| ||||||||||||||||||| |||||||||||| ||| || | |||||| |||||||||||||| ||| ||||| | || ||
T
16348571
gatggtggcattattcagatgattcccaccaagcccatggtggtagagactttttctgaatatccttcactcggccgttttattgtcagagatacgcatc
16348472
T
Q
335
aaactgtggcttttgg
350
Q
||||||||||| ||||
T
16348471
aaactgtggctattgg
16348456
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 3e-52; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 38 - 350
Target Start/End: Complemental strand, 4231086 - 4230774
Alignment:
Q
38
acccagccacggaggccgctcactttacatctcaagttatcatcacaaatgaccctggcctgattagaaaaggttatacacctattcttgactgccacac
137
Q
||||||||| |||||| ||| |||| |||||||| || || |||| ||| ||||||||| |||| |||| |||||| | ||| ||||||||||||||||
T
4231086
acccagccaaggaggctgctaacttcacatctcaggtgattatcatgaatcaccctggccagattggaaatggttatgcccctgttcttgactgccacac
4230987
T
Q
138
ctcccacgttgctgtcatgtttgttgagcttattgccaaggttgactggttttatggtaaggaaattgagaaggagcctgaattcttgaagagtggtgat
237
Q
||||||| |||| |||| ||||| ||||||| || | ||| ||||| || || ||||||||| || |||||||||||| ||||| |||||| ||| |||
T
4230986
ctcccacattgcagtcaagtttgctgagcttgttactaagattgacaggcgttctggtaaggagatcgagaaggagcctaaattcctgaagaatggagat
4230887
T
Q
238
gctgctgctattaagatgattcccaccaagcctatggtggtagaggatttcgcttattatcctccactcggccgttttgttgcgagagacaagcgtcaaa
337
Q
|||| | |||||||||||||||||||||||| |||||||| ||| |||| || | ||||||||||| |||||||||| || ||||| | ||| ||||
T
4230886
gctggtattattaagatgattcccaccaagcccatggtggttgagactttctctgaatatcctccacttggccgttttgctgtcagagatatgcggcaaa
4230787
T
Q
338
ctgtggcttttgg
350
Q
|||||||| ||||
T
4230786
ctgtggctgttgg
4230774
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 186 - 356
Target Start/End: Original strand, 19965332 - 19965504
Alignment:
Q
186
gttttatggtaaggaaattgagaaggagcctgaattcttgaagagtggtg--atgctgctgctattaagatgattcccaccaagcctatggtggtagagg
283
Q
||||| |||||||||||||| ||| ||| | |||||||| || ||||| ||||||||| | |||||||||||||| |||||||||||||||||||||
T
19965332
gttttctggtaaggaaattgcaaagatgcccggattcttgatgaatggtgtgatgctgctgttgttaagatgattcccgccaagcctatggtggtagagg
19965431
T
Q
284
atttcgcttattatcctccactcggccgttttgttgcgagagacaagcgtcaaactgtggcttttggcgtcat
356
Q
|||| || | ||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||| |||||
T
19965432
ctttctctcaatatcctccactcggctgttttgttgctagagacatgcgtcaaactgtggcttttggagtcat
19965504
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 38 - 153
Target Start/End: Original strand, 19965214 - 19965329
Alignment:
Q
38
acccagccacggaggccgctcactttacatctcaagttatcatcacaaatgaccctggcctgattagaaaaggttatacacctattcttgactgccacac
137
Q
||||||||| || ||||||| ||||||||||| | ||||||| ||||| ||||||||| ||||| || || ||||||||| ||||||||||||||||
T
19965214
acccagccatgggggccgctgactttacatcttatcttatcattacaaaggaccctggcatgattcaaactggctatacacctgttcttgactgccacac
19965313
T
Q
138
ctcccacgttgctgtc
153
Q
||||||| ||||||||
T
19965314
ctcccacattgctgtc
19965329
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 7e-47; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 73 - 356
Target Start/End: Complemental strand, 4619275 - 4618992
Alignment:
Q
73
gttatcatcacaaatgaccctggcctgattagaaaaggttatacacctattcttgactgccacacctcccacgttgctgtcatgtttgttgagcttattg
172
Q
|||||||||| ||| ||||||||| |||| |||| || ||||||||| ||||| | ||||||||||||||| |||||||| ||||| | ||||| | |
T
4619275
gttatcatcaggaatcaccctggccagattggaaatggctatacacctgttcttcattgccacacctcccacactgctgtcaagtttgataagcttctag
4619176
T
Q
173
ccaaggttgactggttttatggtaaggaaattgagaaggagcctgaattcttgaagagtggtgatgctgctgctattaagatgattcccaccaagcctat
272
Q
||||| ||||| ||| || |||||||| ||||||||| ||||| ||||| |||||| ||||||||||| |||||||||||||||||||||||| ||
T
4619175
ccaagattgacaggtgttctggtaaggtaattgagaatgagcccaaattcctgaagaatggtgatgctggcattattaagatgattcccaccaagcccat
4619076
T
Q
273
ggtggtagaggatttcgcttattatcctccactcggccgttttgttgcgagagacaagcgtcaaactgtggcttttggcgtcat
356
Q
|||||||||| ||| || |||||||| ||||||||||||||| || ||||||| |||| ||| |||||| |||| |||||
T
4619075
ggtggtagagactttttctaattatccttcactcggccgttttgctgtcagagacatacgtcgaacagtggctgttggagtcat
4618992
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 43 - 319
Target Start/End: Original strand, 4788124 - 4788400
Alignment:
Q
43
gccacggaggccgctcactttacatctcaagttatcatcacaaatgaccctggcctgattagaaaaggttatacacctattcttgactgccacacctccc
142
Q
|||| |||||||| | ||||||||||||| ||||||||||||||| ||||||| | |||| |||||| ||||| ||||||||| |||||||||||||||
T
4788124
gccaaggaggccgattactttacatctcatgttatcatcacaaatcaccctggacagattgaaaaaggctatacgcctattcttcactgccacacctccc
4788223
T
Q
143
acgttgctgtcatgtttgttgagcttattgccaaggttgactggttttatggtaaggaaattgagaaggagcctgaattcttgaagagtggtgatgctgc
242
Q
| |||||||| |||| |||||||||| |||||||||| || |||| ||| ||||||| || ||||| ||||||||||| |||||||| ||
T
4788224
aaattgctgtcgaatttgatgagcttatttgcaaggttgacaatcattctggttaggtaattgaggagaggcctgcattcttgaagaatggtgatgatgg
4788323
T
Q
243
tgctattaagatgattcccaccaagcctatggtggtagaggatttcgcttattatcctccactcggccgttttgttg
319
Q
| |||| ||||| |||||||||||||||||||||||||| |||| | ||||||||||| |||| ||||||||
T
4788324
tcttattgagatggttcccaccaagcctatggtggtagagcctttctatctatatcctccacttggccattttgttg
4788400
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 38 - 319
Target Start/End: Complemental strand, 4297061 - 4296780
Alignment:
Q
38
acccagccacggaggccgctcactttacatctcaagttatcatcacaaatgaccctggcctgattagaaaaggttatacacctattcttgactgccacac
137
Q
||||||||| ||||| | |||||||||||||||| ||||||||||||||| ||||| ||| |||| | |||| ||||||||||||||| ||||||||||
T
4297061
acccagccaaggaggtcactcactttacatctcatgttatcatcacaaatcaccctagccagattgaagaaggctatacacctattcttcactgccacac
4296962
T
Q
138
ctcccacgttgctgtcatgtttgttgagcttattgccaaggttgactggttttatggtaaggaaattgagaaggagcctgaattcttgaagagtggtgat
237
Q
||||||| || |||||| |||| |||||||||| ||||||||||| | || | |||| |||||||||| || ||||||||||| ||||||
T
4296961
ctcccacattcctgtcaaatttgctgagcttatttacaaggttgactattgttctcataagataattgagaagcgcccaccattcttgaagaatggtgac
4296862
T
Q
238
gctgctgctattaagatgattcccaccaagcctatggtggtagaggatttcgcttattatcctccactcggccgttttgttg
319
Q
| | ||||||||||||||||||| || |||||||||||||| |||| || | |||||||||| ||||||||||||
T
4296861
aattgtcttattaagatgattcccaccgagtctatggtggtagagcctttctctctatctcctccactcagccgttttgttg
4296780
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 130 - 375
Target Start/End: Original strand, 7530010 - 7530255
Alignment:
Q
130
tgccacacctcccacgttgctgtcatgtttgttgagcttattgccaaggttgactggttttatggtaaggaaattgagaaggagcctgaattcttgaaga
229
Q
||||||||||| ||| ||||||| | ||||| ||| ||| || ||||| ||||| || | ||||||||| |||||||||||||| | ||||||||||
T
7530010
tgccacacctctcacattgctgtgaagtttgctgaacttgttaccaagattgacaggcgatctggtaaggagattgagaaggagcccaagttcttgaaga
7530109
T
Q
230
gtggtgatgctgctgctattaagatgattcccaccaagcctatggtggtagaggatttcgcttattatcctccactcggccgttttgttgcgagagacaa
329
Q
||||||||||| | ||||||||| ||||||||||||| |||||||| ||| || ||| | |||||||| || || ||||||| || || ||||
T
7530110
atggtgatgctggtatcattaagatggttcccaccaagcccatggtggttgagacctttgctgaatatcctcctcttggacgttttgctgtcagggacat
7530209
T
Q
330
gcgtcaaactgtggcttttggcgtcatcgcgtctgtggagaggaag
375
Q
|||||||||||| ||| |||| |||||| | ||||||||| ||||
T
7530210
gcgtcaaactgttgctgttggtgtcatcaaggctgtggagaagaag
7530255
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 130 - 375
Target Start/End: Original strand, 7520473 - 7520718
Alignment:
Q
130
tgccacacctcccacgttgctgtcatgtttgttgagcttattgccaaggttgactggttttatggtaaggaaattgagaaggagcctgaattcttgaaga
229
Q
||||||||||| ||| ||||||| | ||||| ||| ||| || ||||| ||||| || | ||||||||| |||||||||||||| | ||||||||||
T
7520473
tgccacacctctcacattgctgtgaagtttgctgaacttgttaccaagattgacaggcgatctggtaaggagattgagaaggagcccaagttcttgaaga
7520572
T
Q
230
gtggtgatgctgctgctattaagatgattcccaccaagcctatggtggtagaggatttcgcttattatcctccactcggccgttttgttgcgagagacaa
329
Q
|||||||||| | ||||||||| ||||||||||||| |||||||| ||| |||||| | |||||||| || || ||||||| | || ||||
T
7520573
acggtgatgctggtatcattaagatggttcccaccaagcccatggtggttgagaccttcgctgaatatcctcctcttggacgttttgccgtcagggacat
7520672
T
Q
330
gcgtcaaactgtggcttttggcgtcatcgcgtctgtggagaggaag
375
Q
|||||||||||| ||| |||| |||||| | ||||||||| ||||
T
7520673
gcgtcaaactgttgctgttggtgtcatcaaggctgtggagaagaag
7520718
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
© Oklahoma State University
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