View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0122_low_5 (Length: 415)
Name: NF0122_low_5
Description: NF0122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0122_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 49 - 386
Target Start/End: Complemental strand, 17111305 - 17110966
Alignment:
| Q |
49 |
aaataatggtcattccaa--gtgagattagccactaaatgatccattcatgacccaaaatactgatcatacataacccaaaatccaaaatatgcaagtca |
146 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
17111305 |
aaataatggtcattgcaaaagtgagattagccactaaatgatccatacatgacccaaaatactgatcatacatgacccaaaatccaaaatatgcaagtca |
17111206 |
T |
|
| Q |
147 |
aagtaatagtggttatgtatctctaagagttgcaaatattctcatcaaataatttctcggtacatgacacacaatatgaaaccaacacttgaatcagaac |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17111205 |
aagtaatagtggttatgtatctctaagagttgcaaatattctcatcaaataatttctcagtacatgacacacaatatgaaaccaacacttgaatcagaac |
17111106 |
T |
|
| Q |
247 |
caaaaaccaacacttgaataagcaaaaagttcttcctgtaatgtttaagcaaaccaaagtctcactggatttccttctaacctgtattgcgaaaaaatca |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17111105 |
caaaaaccaacacttgaataagcaaaaagttcttcctgtaatgtttaagcaaaccaaactctcactggatttccttctaacctgtattgcgaaaaaatca |
17111006 |
T |
|
| Q |
347 |
aatggagcattcatcaatcaatatgaaatagcttatgcat |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17111005 |
aatggagcattcatcaatcaatatgaaatagcttatgcat |
17110966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 17111406 - 17111356
Alignment:
| Q |
1 |
tcatcatataataatggttagctacttgcttgttaacattggtcaagcaaa |
51 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
17111406 |
tcatcatataataatggttagctacttacttgttaacattggtcaagcaaa |
17111356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1526 times since January 2019
Visitors: 1423