View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0122_low_8 (Length: 304)
Name: NF0122_low_8
Description: NF0122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0122_low_8
Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 92 - 292
Target Start/End: Complemental strand, 40763871 - 40763671
Alignment:
Q
92
agattcagtaggaggaggattctgtatcagttccttctccaacctctctgcttcactgaacagagttgtcacttgaaacatttcaccagcaccctcacaa
191
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
40763871
agattcagtaggaggaggattctgtatcagttccttctccaacctctctgcttcactgaacagagttgtcacttgaaacatttcaccagcaccctcacaa
40763772
T
Q
192
tcacttgtcgtgacaattggcgtgcgcacataaagaaacccatgcttgttgaaaaatgtatgtgtagcataagcaagagcattcccaatccgagcaacag
291
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
40763771
tcacttgtcgtgacaattggcgtgcgcacataaagaaacccatgcttgttgaaaaatgtatgtgtagcataagcaagagcattcccaatccgagcaacag
40763672
T
Q
292
c
292
Q
|
T
40763671
c
40763671
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 40763991 - 40763938
Alignment:
Q
92
agattcagtaggaggaggattctgtatcagttccttctccaacctctctgcttc
145
Q
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||
T
40763991
agattcagtaggaggaggattctgtatctgttccttctccaacctttctgcttc
40763938
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 95 - 292
Target Start/End: Complemental strand, 42911596 - 42911399
Alignment:
Q
95
ttcagtaggaggaggattctgtatcagttccttctccaacctctctgcttcactgaacagagttgtcacttgaaacatttcaccagcaccctcacaatca
194
Q
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
T
42911596
ttcagttggaggaggattctgtatcagttccttctccaacctctctgcttcactgaacaaagttgtcacttgaaacatttcaccagcaccctcacaatca
42911497
T
Q
195
cttgtcgtgacaattggcgtgcgcacataaagaaacccatgcttgttgaaaaatgtatgtgtagcataagcaagagcattcccaatccgagcaacagc
292
Q
|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
T
42911496
ctagtcgtgacaattggcgtgtgcacataaagaaacccatgcttgttgaaaaatgtatgtgtagcataagcaagagcattccgaatccgagcaacagc
42911399
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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