View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0122_low_9 (Length: 299)
Name: NF0122_low_9
Description: NF0122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0122_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 78 - 278
Target Start/End: Complemental strand, 40763871 - 40763671
Alignment:
| Q |
78 |
agattcagtaggaggaggattctgtatcagttccttctccaacctctctgcttcactgaacagagttgtcacttgaaacatttcaccagcaccctcacaa |
177 |
Q |
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| T |
40763871 |
agattcagtaggaggaggattctgtatcagttccttctccaacctctctgcttcactgaacagagttgtcacttgaaacatttcaccagcaccctcacaa |
40763772 |
T |
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| Q |
178 |
tcacttgtcgtgacaattggcgtgcgcacataaagaaacccatgcttgttgaaaaatgtatgtgtagcataagcaagagcattcccaatccgagcaacag |
277 |
Q |
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| T |
40763771 |
tcacttgtcgtgacaattggcgtgcgcacataaagaaacccatgcttgttgaaaaatgtatgtgtagcataagcaagagcattcccaatccgagcaacag |
40763672 |
T |
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| Q |
278 |
c |
278 |
Q |
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| |
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| T |
40763671 |
c |
40763671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 40763991 - 40763938
Alignment:
| Q |
78 |
agattcagtaggaggaggattctgtatcagttccttctccaacctctctgcttc |
131 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
40763991 |
agattcagtaggaggaggattctgtatctgttccttctccaacctttctgcttc |
40763938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 81 - 278
Target Start/End: Complemental strand, 42911596 - 42911399
Alignment:
| Q |
81 |
ttcagtaggaggaggattctgtatcagttccttctccaacctctctgcttcactgaacagagttgtcacttgaaacatttcaccagcaccctcacaatca |
180 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
42911596 |
ttcagttggaggaggattctgtatcagttccttctccaacctctctgcttcactgaacaaagttgtcacttgaaacatttcaccagcaccctcacaatca |
42911497 |
T |
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| Q |
181 |
cttgtcgtgacaattggcgtgcgcacataaagaaacccatgcttgttgaaaaatgtatgtgtagcataagcaagagcattcccaatccgagcaacagc |
278 |
Q |
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|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42911496 |
ctagtcgtgacaattggcgtgtgcacataaagaaacccatgcttgttgaaaaatgtatgtgtagcataagcaagagcattccgaatccgagcaacagc |
42911399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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