View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0123_low_1 (Length: 497)
Name: NF0123_low_1
Description: NF0123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0123_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 4 - 430
Target Start/End: Original strand, 18012300 - 18012721
Alignment:
| Q |
4 |
aagcatcagaagttcgtggaatttcatctacaatgtnnnnnnnnnnnnnnnnttgacattcaacaagtagaattggcaagtatataatcacaccctataa |
103 |
Q |
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| T |
18012300 |
aagcatcagaagttcgtggaatttcatctacaatgtaaagaaaaagaaaaaattgacattcaacaagtagaaatggaaagtatata-tcacaacctataa |
18012398 |
T |
|
| Q |
104 |
agcgcatacatgccctaatgtcgtgttgattttggacactaacatatgtcgtacacacaccaacatgcgtcagactccaaaaacactttcaatctgaagt |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||| |||||||||||||||||||||||| |
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| T |
18012399 |
agcgcatacatgccctaatgtcgtgttgattttggacactaacatatgtcgtacacacaacatcatgtgtcagacaccaaaaacactttcaatctgaagt |
18012498 |
T |
|
| Q |
204 |
gtcggcactacatagatgacgaccatgatttaaaatattgttcctattataaaatggctaaaatgaagtgataattgatttgaattaaccaaacatgctt |
303 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| | |
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| T |
18012499 |
gtcggtactacatagatgacgaccatgatttaaaacattgttcctaatataaaaaggctaaaatgaagtgataattgatttgaattaaccaaaca----t |
18012594 |
T |
|
| Q |
304 |
gcttacctgcatcataactacaatgcctcctatgagtaatccttctcttgacatgacgccaatgatgatactttattacatgaagaattccccacactct |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18012595 |
gcttacctgcatcataactacaatgcctcctatgagtaatccttctcttgacatgacgccaatgatgatactttattacatgaagaattccccacactct |
18012694 |
T |
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| Q |
404 |
tcctggatgagtatgatggctattaat |
430 |
Q |
| |
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| T |
18012695 |
tcctggatgagtatgatggctattaat |
18012721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 32851947 - 32851914
Alignment:
| Q |
190 |
tttcaatctgaagtgtcggcactacatagatgac |
223 |
Q |
| |
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||||||||||||||||||| |||||||||||||| |
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| T |
32851947 |
tttcaatctgaagtgtcggtactacatagatgac |
32851914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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