View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0123_low_11 (Length: 265)
Name: NF0123_low_11
Description: NF0123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0123_low_11 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 42 - 265
Target Start/End: Complemental strand, 3253883 - 3253658
Alignment:
| Q |
42 |
catgaactacaatcttggagtttgtagagaaaatcacattatcaaatccaagctctc--gagtcttgacccaatgaatcgcagcaagtagcatgttcgct |
139 |
Q |
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| T |
3253883 |
catgaactacaatcttggagtttgtagagaaaatcacattatcaaatccaagctctcttgagtcttgacccaatgaatcgcagcaagtagcatgttcgct |
3253784 |
T |
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| Q |
140 |
ttgcctatgggaacagaaaaaataggttctagccacatcgttttagctcaaacaaaaaaccctatttcatctcttatacgttacactattaaagcttgta |
239 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3253783 |
ttgcctatgggaacagaaaaaaaaggttctagccacatcgttttagctcaaacaaaaaaccctatttcatctcttatacgttacactattaaagcttgta |
3253684 |
T |
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| Q |
240 |
taaaagcgaaacatatacattacact |
265 |
Q |
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|||||||||||||||||||||||||| |
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| T |
3253683 |
taaaagcgaaacatatacattacact |
3253658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 218
Target Start/End: Complemental strand, 27757055 - 27756893
Alignment:
| Q |
48 |
ctacaatcttggagtttgtagagaaaatcacattatcaaatccaagctctcgagtcttgacccaatgaatcgcagcaagtagcatgttcgctttgcctat |
147 |
Q |
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||||||| ||||||| |||||||||||| | |||||||||||||||||||| ||||||||||||| ||| || |||| ||| ||| | |||| |
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| T |
27757055 |
ctacaattttggagtgtgtagagaaaattatattatcaaatccaagctctc------tgacccaatgaattgcaacaggtagtgctttcacttcggctat |
27756962 |
T |
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| Q |
148 |
gggaacagaaaaaataggttctagccacatcgttttagctcaaacaaaaaaccctatttcatctcttatac |
218 |
Q |
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| T |
27756961 |
gtgaac-gaaaaaa-aggttttaaccacatcgttttatctccaacaaaagcccctatttattctcttatac |
27756893 |
T |
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