View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0123_low_2 (Length: 375)
Name: NF0123_low_2
Description: NF0123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0123_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 24 - 354
Target Start/End: Complemental strand, 52930391 - 52930061
Alignment:
| Q |
24 |
tcatcattgaaaaaagagatcgaacacttaaaccctacccccgtcgatgtcaatgaaatcgacagcgacgtttacgaatacgaagaagaactacccgagg |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52930391 |
tcatcattgaaaaaagagatcgaacacttaaaccctacccccgtcgatgtcaatgaaatcgacagcgacgtttacgaatacgaagaagaactacccgagg |
52930292 |
T |
|
| Q |
124 |
aagagtccagcaagaataaacgttacgaccctgtatctgtcaatgataataacgacctttcttctgattttgaggtatgttatgaattgaacaataagtt |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52930291 |
aagagtccagcaagaataaacgttacgaccctgtatctgtcaatgataataacgacctttcttctgattttgaggtatgttatgaattgaacaataagtt |
52930192 |
T |
|
| Q |
224 |
gtttatccaaatatatccttaatttctgatttgtctgaatccatttgtttgttaggatgtgaatgtacaatctgatgatgacggcaacaatattattgga |
323 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52930191 |
gtttatccaaatctatccttaatttctgatttgtctgaatccatttgtttgttaggatgtgaatgtacaatctgatgatgacggcaacaatattattgga |
52930092 |
T |
|
| Q |
324 |
attaagaggaatgaaattgtttctgatgatg |
354 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
52930091 |
attaagaggaatgaaattgtttctgatgatg |
52930061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 24 - 199
Target Start/End: Complemental strand, 44371849 - 44371674
Alignment:
| Q |
24 |
tcatcattgaaaaaagagatcgaacacttaaaccctacccccgtcgatgtcaatgaaatcgacagcgacgtttacgaatacgaagaagaactacccgagg |
123 |
Q |
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||||| |||||||||||||| ||||||||||||||||||| || |||||| |||| ||||||||||| |||||||||||||||||||||| ||| || | |
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| T |
44371849 |
tcatctttgaaaaaagagattcaacacttaaaccctacccctgttgatgtcgatgatatcgacagcgatgtttacgaatacgaagaagaacaacctgaag |
44371750 |
T |
|
| Q |
124 |
aagagtccagcaagaataaacgttacgaccctgtatctgtcaatgataataacgacctttcttctgattttgaggt |
199 |
Q |
| |
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|||| ||||| |||||||| |||||||||||||| ||||| |||||| |||| ||||||||||||||||| ||||| |
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| T |
44371749 |
aagaatccagaaagaataagcgttacgaccctgtttctgttaatgatgataatgacctttcttctgatttcgaggt |
44371674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 24 - 199
Target Start/End: Complemental strand, 44380704 - 44380529
Alignment:
| Q |
24 |
tcatcattgaaaaaagagatcgaacacttaaaccctacccccgtcgatgtcaatgaaatcgacagcgacgtttacgaatacgaagaagaactacccgagg |
123 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||| || |||||| |||| ||||||||||| |||||||||||||||||||||| ||| || | |
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| T |
44380704 |
tcatctttgaaaaaagagattcaacacttaaaccctacccctgttgatgtcgatgatatcgacagcgatgtttacgaatacgaagaagaacaacctgaag |
44380605 |
T |
|
| Q |
124 |
aagagtccagcaagaataaacgttacgaccctgtatctgtcaatgataataacgacctttcttctgattttgaggt |
199 |
Q |
| |
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|||| ||||| |||||||| |||||||||||||| ||||| |||||| |||| ||||||||||||||||| ||||| |
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| T |
44380604 |
aagaatccagaaagaataagcgttacgaccctgtttctgttaatgatgataatgacctttcttctgatttcgaggt |
44380529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 306
Target Start/End: Complemental strand, 44371629 - 44371571
Alignment:
| Q |
252 |
atttgtctgaatc---catttgtttgtt-aggatgtgaatgtacaatctgatgatgacg |
306 |
Q |
| |
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||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
44371629 |
atttgtctgaatcattcatttgtttgtttaggatgagaatgtacaatctgatgatgacg |
44371571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 306
Target Start/End: Complemental strand, 44380484 - 44380426
Alignment:
| Q |
252 |
atttgtctgaatc---catttgtttgtt-aggatgtgaatgtacaatctgatgatgacg |
306 |
Q |
| |
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||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
44380484 |
atttgtctgaatcattcatttgtttgtttaggatgagaatgtacaatctgatgatgacg |
44380426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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