View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0123_low_3 (Length: 371)
Name: NF0123_low_3
Description: NF0123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0123_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 25 - 277
Target Start/End: Original strand, 38281543 - 38281795
Alignment:
| Q |
25 |
cagacagtttatcatcaaaagaacaagacaggttcctaccaattgctaacgtgagccgtataatgaaaagagcacttccagcaaatgctaaaatctcaaa |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38281543 |
cagacagtttatcatcaaaagaacaagacaggttcctaccaattgctaacgtgagccgtataatgaaaagagcacttccagcaaatgctaaaatctcaaa |
38281642 |
T |
|
| Q |
125 |
agaagcaaaagaaacggttcaagaatgtgtctctgagttcattagtttcattactggtgaagcttctgataagtgtcagagagaaaaaaggaaaacaatt |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38281643 |
agaagcaaaagaaacggttcaagaatgtgtctctgagttcattagtttcattactggtgaagcttctgataagtgtcagagagaaaaaaggaaaacaatt |
38281742 |
T |
|
| Q |
225 |
aatggtgatgatcttctttgggctatgacaacacttggttttgaaaactatgt |
277 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38281743 |
aatggtgatgatcttctttgggctatgacaacacttggttttgaaaactatgt |
38281795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 100 - 256
Target Start/End: Original strand, 39304532 - 39304688
Alignment:
| Q |
100 |
ttccagcaaatgctaaaatctcaaaagaagcaaaagaaacggttcaagaatgtgtctctgagttcattagtttcattactggtgaagcttctgataagtg |
199 |
Q |
| |
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|||| ||||||| ||||||||||| || |||||||| || |||||||||||||| || |||||||| ||||| | || || ||||| || ||||| || |
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| T |
39304532 |
ttcctgcaaatggaaaaatctcaaaggatgcaaaagagacagttcaagaatgtgtgtcggagttcataagttttgtcaccggggaagcatcggataaatg |
39304631 |
T |
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| Q |
200 |
tcagagagaaaaaaggaaaacaattaatggtgatgatcttctttgggctatgacaac |
256 |
Q |
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| T |
39304632 |
tcaaagagaaaaaagaaagacaatcaacggtgatgatattatttgggctattacaac |
39304688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 102 - 269
Target Start/End: Original strand, 9722678 - 9722845
Alignment:
| Q |
102 |
ccagcaaatgctaaaatctcaaaagaagcaaaagaaacggttcaagaatgtgtctctgagttcattagtttcattactggtgaagcttctgataagtgtc |
201 |
Q |
| |
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|||||||| || || ||||||||||||||||||||||| || ||||| ||||| || ||||| || |||||||| ||||| ||||||||||||||||||| |
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| T |
9722678 |
ccagcaaacgcaaagatctcaaaagaagcaaaagaaacagtacaagagtgtgtatcagagtttatcagtttcataactggagaagcttctgataagtgtc |
9722777 |
T |
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| Q |
202 |
agagagaaaaaaggaaaacaattaatggtgatgatcttctttgggctatgacaacacttggttttgaa |
269 |
Q |
| |
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||| ||| || ||||||||||| || ||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
9722778 |
agaaagagaagaggaaaacaatcaacggtgatgatcttctttgggctatgacaactcttggatttgaa |
9722845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 123 - 269
Target Start/End: Original strand, 56067961 - 56068107
Alignment:
| Q |
123 |
aaagaagcaaaagaaacggttcaagaatgtgtctctgagttcattagtttcattactggtgaagcttctgataagtgtcagagagaaaaaaggaaaacaa |
222 |
Q |
| |
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|||||||| ||||||||| | ||||| ||||| || |||||||| || ||||| || |||||||| ||||| |||||||||| ||| || ||||| |||| |
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| T |
56067961 |
aaagaagctaaagaaacgatgcaagagtgtgtatcagagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaagaggaagacaa |
56068060 |
T |
|
| Q |
223 |
ttaatggtgatgatcttctttgggctatgacaacacttggttttgaa |
269 |
Q |
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| T |
56068061 |
taaacggtgatgatcttgtgtgggccatgactacacttggctttgaa |
56068107 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 44 - 253
Target Start/End: Original strand, 41866523 - 41866732
Alignment:
| Q |
44 |
agaacaagacaggttcctaccaattgctaacgtgagccgtataatgaaaagagcacttccagcaaatgctaaaatctcaaaagaagcaaaagaaacggtt |
143 |
Q |
| |
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|||||||||| | || ||||||| || ||||||||| | |||||||| | || | |||||||| || || ||||| ||||| || || |||||||| |
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| T |
41866523 |
agaacaagaccgatttttaccaatagcaaacgtgagcagaataatgaagaaggcgttaccagcaaacgcgaagatctcgaaagatgctaaggaaacggtg |
41866622 |
T |
|
| Q |
144 |
caagaatgtgtctctgagttcattagtttcattactggtgaagcttctgataagtgtcagagagaaaaaaggaaaacaattaatggtgatgatcttcttt |
243 |
Q |
| |
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|| |||||||| || |||||||| || ||||| || ||||||||||| ||||||||||||||||| ||| | || || || || || || ||||| |||| |
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| T |
41866623 |
caggaatgtgtatcggagttcatcagcttcatcaccggtgaagcttccgataagtgtcagagagagaaacgaaagacgatcaacggcgacgatctacttt |
41866722 |
T |
|
| Q |
244 |
gggctatgac |
253 |
Q |
| |
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|||| ||||| |
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| T |
41866723 |
gggcgatgac |
41866732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 23569681 - 23569839
Alignment:
| Q |
44 |
agaacaagacaggttcctaccaattgctaacgtgagccgtataatgaaaagagcacttccagcaaatgctaaaatctcaaaagaagcaaaagaaacggtt |
143 |
Q |
| |
|
|||||||||| | || || ||||| || ||||| ||| | || ||||||| |||||| ||||| || || || ||||||||||| ||||| ||||| ||| |
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| T |
23569681 |
agaacaagaccgatttcttccaatagcaaacgtaagcaggatcatgaaaaaagcactaccagcgaacgcgaagatctcaaaagacgcaaaggaaacagtt |
23569780 |
T |
|
| Q |
144 |
caagaatgtgtctctgagttcattagtttcattactggtgaagcttctgataagtgtca |
202 |
Q |
| |
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||||| ||||| || |||||||| || ||||| || || ||||| || ||||||||||| |
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| T |
23569781 |
caagagtgtgtttcagagttcatcagcttcatcaccggcgaagcctccgataagtgtca |
23569839 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 202
Target Start/End: Complemental strand, 39786455 - 39786359
Alignment:
| Q |
106 |
caaatgctaaaatctcaaaagaagcaaaagaaacggttcaagaatgtgtctctgagttcattagtttcattactggtgaagcttctgataagtgtca |
202 |
Q |
| |
|
||||||| |||||||| ||||| || |||||||| | ||||| |||||||| ||||| ||||||| | ||||||||||| ||||| |||||||| |
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| T |
39786455 |
caaatgcaaaaatctcgaaagatgctaaagaaaccatgcaagagtgtgtctcagagtttgttagttttgtaactggtgaagcatctgacaagtgtca |
39786359 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 22139957 - 22140015
Alignment:
| Q |
189 |
tctgataagtgtcagagagaaaaaaggaaaacaattaatggtgatgatcttctttgggc |
247 |
Q |
| |
|
|||||||||||||||||||| || ||||| || ||||| ||||||||| | |||||||| |
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|
| T |
22139957 |
tctgataagtgtcagagagagaagaggaagacgattaacggtgatgatttgctttgggc |
22140015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 40539347 - 40539405
Alignment:
| Q |
189 |
tctgataagtgtcagagagaaaaaaggaaaacaattaatggtgatgatcttctttgggc |
247 |
Q |
| |
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|||||||||||||||||||| || ||||| || ||||| ||||||||| | |||||||| |
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|
| T |
40539347 |
tctgataagtgtcagagagagaagaggaagacgattaacggtgatgatttgctttgggc |
40539405 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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