View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0123_low_4 (Length: 363)

Name: NF0123_low_4
Description: NF0123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0123_low_4
NF0123_low_4
[»] chr5 (13 HSPs)
chr5 (30-355)||(3299765-3300090)
chr5 (30-355)||(3392658-3392983)
chr5 (31-257)||(1163333-1163562)
chr5 (61-162)||(1850192-1850293)
chr5 (117-257)||(40418614-40418758)
chr5 (253-343)||(1850346-1850444)
chr5 (289-353)||(1163224-1163288)
chr5 (117-257)||(38988036-38988180)
chr5 (117-257)||(39880151-39880297)
chr5 (117-257)||(39726755-39726906)
chr5 (255-336)||(39880327-39880405)
chr5 (255-336)||(40418782-40418860)
chr5 (283-336)||(38988229-38988282)
[»] chr4 (3 HSPs)
chr4 (113-257)||(44444395-44444543)
chr4 (117-212)||(25911951-25912046)
chr4 (300-336)||(25911785-25911821)


Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 30 - 355
Target Start/End: Original strand, 3299765 - 3300090
Alignment:
Q  30 actaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaagacctttttatc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299765 actaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaagacctttttatc 3299864  T
Q  130 cattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataaccaaaacaaggaagatg 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299865 cattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataaccaaaacaaggaagatg 3299964  T
Q  230 cttttcatttattagcttttttctatttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttat 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299965 cttttcatttattagcttttttctatttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttat 3300064  T
Q  330 gtttattagaacaagttatctgtgct 355  Q
    ||||||||||||||||||| ||||||    
T  3300065 gtttattagaacaagttatgtgtgct 3300090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 30 - 355
Target Start/End: Original strand, 3392658 - 3392983
Alignment:
Q  30 actaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaagacctttttatc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392658 actaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaagacctttttatc 3392757  T
Q  130 cattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataaccaaaacaaggaagatg 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392758 cattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataaccaaaacaaggaagatg 3392857  T
Q  230 cttttcatttattagcttttttctatttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttat 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392858 cttttcatttattagcttttttctatttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttat 3392957  T
Q  330 gtttattagaacaagttatctgtgct 355  Q
    ||||||||||||||||||| ||||||    
T  3392958 gtttattagaacaagttatgtgtgct 3392983  T

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Target: chr5; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 31 - 257
Target Start/End: Complemental strand, 1163562 - 1163333
Alignment:
Q  31 ctaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaagacctttttatcc 130  Q
    |||||||||||||||||| |||||||||||||||||||| |||| |||||||||||| || | ||  | ||| ||||||||||   |||||||||| |||    
T  1163562 ctaaactcctcttcgaccaaagagcaatctaccgaaatccaacctactgccatccatctggcccactcttcagatcccccttttatagacctttttttcc 1163463  T
Q  131 attggaggatttgcttgatggatgat---ccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataaccaaaacaaggaaga 227  Q
    ||||||||||||||||||||||||||   | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1163462 attggaggatttgcttgatggatgatgatctacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataacaaaaacaaggaaga 1163363  T
Q  228 tgcttttcatttattagcttttttctattt 257  Q
    |||||||||||||||||||||||| |||||    
T  1163362 tgcttttcatttattagcttttttatattt 1163333  T

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Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 61 - 162
Target Start/End: Original strand, 1850192 - 1850293
Alignment:
Q  61 accgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaagacctttttatccattggaggatttgcttgatggatgatccac 160  Q
    ||||||||| ||||||||||||||||| || | || |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  1850192 accgaaatccaaccaactgccatccatctggcccacccatcagatccccttttagaagacctttttatccattggaggatttgcttgatggatgatctac 1850291  T
Q  161 tt 162  Q
    ||    
T  1850292 tt 1850293  T

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Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 117 - 257
Target Start/End: Original strand, 40418614 - 40418758
Alignment:
Q  117 agacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataac--c 214  Q
    |||||||||  |||||||||||| |||||||| |||||||| | |||| |||||||||||| ||||||| | || ||||||||||  ||||||||||  |    
T  40418614 agaccttttgttccattggaggacttgcttgacggatgatctagttactagcttaaacaaaaatcacttttgttaatgttttgtttgttccaataacaac 40418713  T
Q  215 aaaa--caaggaagatgcttttcatttattagcttttttctattt 257  Q
    ||||  |||||||||||||||||||||||||| || |||||||||    
T  40418714 aaaaatcaaggaagatgcttttcatttattaggttctttctattt 40418758  T

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Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 253 - 343
Target Start/End: Original strand, 1850346 - 1850444
Alignment:
Q  253 tatttattccgataacaagaacaacta--------gttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttattagaacaa 343  Q
    |||||||||||||||||||||||| ||        |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  1850346 tatttattccgataacaagaacaaatacttaaaaggttcttttcacttactttgttgcaatttacaatttctgtttgatatttatgtttattagaacaa 1850444  T

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Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 289 - 353
Target Start/End: Complemental strand, 1163288 - 1163224
Alignment:
Q  289 acttactctgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatctgtg 353  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1163288 acttactttgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgtgtg 1163224  T

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Target: chr5; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 117 - 257
Target Start/End: Original strand, 38988036 - 38988180
Alignment:
Q  117 agacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataacca- 215  Q
    ||||||||| ||||||||||||| |||||||| |||||||| | | || |||||||||||| ||||||| | |||||||||||||  |||||||||| |     
T  38988036 agaccttttgatccattggaggacttgcttgacggatgatctagtcactagcttaaacaaaaatcacttttgttgatgttttgtttgttccaataacaac 38988135  T
Q  216 ---aaacaaggaagatgcttttcatttattagcttttttctattt 257  Q
       || |||||||| |||| |||||||||||| || |||||||||    
T  38988136 aacaatcaaggaagctgctcttcatttattaggttctttctattt 38988180  T

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Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 257
Target Start/End: Original strand, 39880151 - 39880297
Alignment:
Q  117 agacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataacca- 215  Q
    |||||||||| |||||||||||| |||||||| |||||||| | |||| |||||||||||| ||||||| | |||||||||| ||  |||||||||  |     
T  39880151 agacctttttttccattggaggacttgcttgacggatgatctagttactagcttaaacaaaaatcacttttgttgatgtttt-tttgttccaataataac 39880249  T
Q  216 ------aaacaaggaagatgcttttcatttattagcttttttctattt 257  Q
          || |||||||||||||||||||||||||| || |||||||||    
T  39880250 aacaacaatcaaggaagatgcttttcatttattaggttctttctattt 39880297  T

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Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 257
Target Start/End: Original strand, 39726755 - 39726906
Alignment:
Q  117 agacctttttatccattggaggatttgcttgatggatgatccac----ttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataa 212  Q
    ||||||||| ||||||||||||| |||||||| |||||||| |     |||| |||||||||||| ||||| | | |||||||||||||  |||||||||    
T  39726755 agaccttttgatccattggaggacttgcttgacggatgatctagctagttactagcttaaacaaaaatcacctttgttgatgttttgtttgttccaataa 39726854  T
Q  213 ccaaaacaa-------ggaagatgcttttcatttattagcttttttctattt 257  Q
      | |||||       ||||||||||||||||||||||| || |||||||||    
T  39726855 taacaacaacaatcaaggaagatgcttttcatttattaggttctttctattt 39726906  T

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Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 336
Target Start/End: Original strand, 39880327 - 39880405
Alignment:
Q  255 tttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttatt 336  Q
    |||||||| || ||||||||||   || |||||||||||   || |||| ||||||||||||||||||||||||||||||||    
T  39880327 tttattccaatgacaagaacaa---gtgcttttcacttaggttgctgcagtttgcaatttctgtttgatatttatgtttatt 39880405  T

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Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 336
Target Start/End: Original strand, 40418782 - 40418860
Alignment:
Q  255 tttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttatt 336  Q
    |||||||| || ||||||||||   || |||||||||||   || |||| ||||||||||||||||||||||||||||||||    
T  40418782 tttattccaatgacaagaacaa---gtgcttttcacttaggttgctgcagtttgcaatttctgtttgatatttatgtttatt 40418860  T

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Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 336
Target Start/End: Original strand, 38988229 - 38988282
Alignment:
Q  283 cttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttatt 336  Q
    |||||||||||   || |||| ||||||||||||||||||||||||||||||||    
T  38988229 cttttcacttaggttgctgcagtttgcaatttctgtttgatatttatgtttatt 38988282  T

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Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 113 - 257
Target Start/End: Complemental strand, 44444543 - 44444395
Alignment:
Q  113 tagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataa 212  Q
    ||||||| |||||  |||||| ||||| |||||||| |||||||| | ||||||||||||||||| ||||||| | |||||||||||||   ||||||||    
T  44444543 tagaagatcttttgttccattagaggacttgcttgacggatgatctagttacaagcttaaacaaaaatcacttttgttgatgttttgtttactccaataa 44444444  T
Q  213 ccaaaa----caaggaagatgcttttcatttattagcttttttctattt 257  Q
    | ||||    ||||||| |||| ||||||||||||| || |||||||||    
T  44444443 cgaaaacaatcaaggaatatgcctttcatttattaggttatttctattt 44444395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 212
Target Start/End: Complemental strand, 25912046 - 25911951
Alignment:
Q  117 agacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataa 212  Q
    |||||||||  |||||||||||| |||||||| |||||||| | |||| |||||||||||| ||||||| | |||||||||||||  |||||||||    
T  25912046 agaccttttgttccattggaggacttgcttgacggatgatctagttactagcttaaacaaaaatcacttttgttgatgttttgtttgttccaataa 25911951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 336
Target Start/End: Complemental strand, 25911821 - 25911785
Alignment:
Q  300 tgcaatttgcaatttctgtttgatatttatgtttatt 336  Q
    |||| |||||||||||||||||||| |||||||||||    
T  25911821 tgcagtttgcaatttctgtttgatacttatgtttatt 25911785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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