View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0124-Insertion-2 (Length: 1071)
Name: NF0124-Insertion-2
Description: NF0124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0124-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 3e-88; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 3e-88
Query Start/End: Original strand, 6 - 195
Target Start/End: Complemental strand, 41976223 - 41976034
Alignment:
| Q |
6 |
cacttttgacaatcattttgaaccattgtataagagacatacctcgataatatcactagccttctgtacctttcgatgaatgtctattaggaacaattca |
105 |
Q |
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| T |
41976223 |
cacttttgacaatcattttgaaccattgtataagagacataccccgataatatcactagccttctgtacctttcgattaatgtctattaggaacaattca |
41976124 |
T |
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| Q |
106 |
tcaaagcataccattttagctgctgagtttagtgttccgtttttcaggtaatcacaatagtgagcgagttctattgtagaatgtattgtc |
195 |
Q |
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| T |
41976123 |
tcaaggcataccattttagctgctgagtttagtgtttggtttttcaggtaatcacaatagtgagcgagttctattgtacaatgtattgtc |
41976034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 836 - 980
Target Start/End: Complemental strand, 41975341 - 41975192
Alignment:
| Q |
836 |
taaataaacaccaagtgtctgatacatgttgatgttcaaaatatgtctgacatgtcgatgcaacacttttaaga-gtgtaattgcattgtagtttgaaaa |
934 |
Q |
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| T |
41975341 |
taaataaacaccaagtttctgatacatgttgatgttcaaaatatatctgacatgtcgatacaacactttcaagaggtgtacttgcattgtagtttgaaaa |
41975242 |
T |
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| Q |
935 |
--caaaatatt-agatccatacaattgagac-aatgtatacagttccaag |
980 |
Q |
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| T |
41975241 |
acaaaaatattgagatccatacaattgagacaaatgtatagagtcccaag |
41975192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 153 - 333
Target Start/End: Complemental strand, 41976002 - 41975833
Alignment:
| Q |
153 |
gtaatcacaatagtgagcgagttctattgtagaatgtattgtcaaaagctttttgattcattttataccccaagtaaagcatgataaaagaaaatttgtg |
252 |
Q |
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| T |
41976002 |
gtaatcacaatagtgagcgatttctattgtagaatgtattgtc-aaagcttttcgattca-tttata-cccaagtaaagcatgataaaagaaaa-ttgtg |
41975907 |
T |
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| Q |
253 |
tatattttgatttgcaaagctttttgatggtgtaatgagttaatggttttggcatttgtaagttcagtctgttgcattgtc |
333 |
Q |
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|||| ||||| |||| |||| ||||||| |||| |||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
41975906 |
tata-tttga-ttgc-aagc-ttttgat-gtgt-atgagttaat-gttttggcctttgtaagttcagtctgttgcattgtc |
41975833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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