View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0124-Insertion-3 (Length: 901)

Name: NF0124-Insertion-3
Description: NF0124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0124-Insertion-3
NF0124-Insertion-3
[»] chr4 (15 HSPs)
chr4 (32-449)||(7774606-7775029)
chr4 (794-899)||(7775262-7775367)
chr4 (629-723)||(7775154-7775248)
chr4 (490-575)||(7775031-7775116)
chr4 (794-893)||(15553490-15553589)
chr4 (794-893)||(53577117-53577216)
chr4 (656-703)||(15553403-15553450)
chr4 (656-703)||(53577256-53577303)
chr4 (721-763)||(44991689-44991731)
chr4 (721-763)||(47602940-47602982)
chr4 (727-763)||(52557498-52557534)
chr4 (727-763)||(53259549-53259585)
chr4 (721-763)||(24898186-24898228)
chr4 (721-763)||(53995346-53995388)
chr4 (722-763)||(47603772-47603813)
[»] chr1 (19 HSPs)
chr1 (794-893)||(11155533-11155632)
chr1 (794-893)||(11160433-11160532)
chr1 (794-893)||(39925652-39925751)
chr1 (271-362)||(28208716-28208807)
chr1 (656-703)||(34108865-34108912)
chr1 (656-703)||(39925791-39925838)
chr1 (656-703)||(43621461-43621508)
chr1 (656-703)||(11155446-11155493)
chr1 (656-703)||(40234138-40234185)
chr1 (794-864)||(43621351-43621421)
chr1 (794-891)||(40234225-40234321)
chr1 (722-763)||(23598070-23598111)
chr1 (722-763)||(49644081-49644122)
chr1 (723-763)||(9006190-9006230)
chr1 (727-763)||(49140553-49140589)
chr1 (721-763)||(20305999-20306041)
chr1 (722-759)||(5537219-5537256)
chr1 (722-763)||(37304439-37304480)
chr1 (722-763)||(39486200-39486241)
[»] scaffold0060 (2 HSPs)
scaffold0060 (794-893)||(4581-4680)
scaffold0060 (656-703)||(4494-4541)
[»] chr8 (10 HSPs)
chr8 (794-893)||(13087319-13087418)
chr8 (794-893)||(41495375-41495474)
chr8 (656-703)||(13087458-13087505)
chr8 (656-703)||(41495514-41495561)
chr8 (723-763)||(7949411-7949451)
chr8 (727-763)||(7535244-7535280)
chr8 (727-763)||(45277007-45277043)
chr8 (724-763)||(11174045-11174084)
chr8 (722-763)||(22763344-22763385)
chr8 (722-763)||(33296095-33296136)
[»] chr5 (18 HSPs)
chr5 (794-893)||(2395637-2395736)
chr5 (794-893)||(7479612-7479711)
chr5 (794-893)||(34762315-34762414)
chr5 (794-893)||(23777432-23777531)
chr5 (794-893)||(23864385-23864484)
chr5 (794-893)||(24349137-24349236)
chr5 (629-703)||(23777571-23777645)
chr5 (629-703)||(23864524-23864598)
chr5 (794-891)||(24328109-24328206)
chr5 (794-882)||(39872400-39872488)
chr5 (656-703)||(2395550-2395597)
chr5 (656-703)||(24328022-24328069)
chr5 (656-703)||(24349276-24349323)
chr5 (656-703)||(39872528-39872575)
chr5 (658-702)||(7479752-7479796)
chr5 (658-703)||(34762454-34762499)
chr5 (727-763)||(36440611-36440647)
chr5 (723-764)||(2597430-2597471)
[»] chr3 (30 HSPs)
chr3 (794-893)||(42646659-42646758)
chr3 (794-893)||(54319747-54319846)
chr3 (794-893)||(965566-965665)
chr3 (794-893)||(13453116-13453215)
chr3 (794-893)||(35185901-35186000)
chr3 (794-893)||(49806886-49806985)
chr3 (656-703)||(965479-965526)
chr3 (656-703)||(49806798-49806845)
chr3 (656-703)||(54319660-54319707)
chr3 (656-703)||(13453029-13453076)
chr3 (656-703)||(42646572-42646619)
chr3 (45-89)||(53556924-53556968)
chr3 (668-703)||(35186040-35186075)
chr3 (722-785)||(15791487-15791556)
chr3 (722-763)||(12203962-12204003)
chr3 (32-89)||(44751632-44751689)
chr3 (727-763)||(12791587-12791623)
chr3 (723-763)||(15790678-15790718)
chr3 (723-763)||(29818176-29818216)
chr3 (149-228)||(44751789-44751873)
chr3 (727-763)||(54752166-54752202)
chr3 (724-763)||(8474257-8474296)
chr3 (720-763)||(24428563-24428606)
chr3 (724-763)||(27801489-27801528)
chr3 (722-761)||(41835339-41835378)
chr3 (729-763)||(22202027-22202061)
chr3 (729-763)||(30681828-30681862)
chr3 (727-761)||(32633478-32633512)
chr3 (29-67)||(44708224-44708262)
chr3 (722-763)||(10505946-10505987)
[»] chr2 (11 HSPs)
chr2 (794-893)||(15034638-15034737)
chr2 (794-893)||(30408343-30408442)
chr2 (656-703)||(15034551-15034598)
chr2 (656-703)||(30408256-30408303)
chr2 (656-703)||(45059358-45059405)
chr2 (722-763)||(8174296-8174337)
chr2 (722-763)||(17032591-17032632)
chr2 (722-763)||(17050927-17050968)
chr2 (729-763)||(38333091-38333125)
chr2 (727-760)||(8962363-8962396)
chr2 (722-763)||(24138066-24138107)
[»] chr7 (9 HSPs)
chr7 (650-723)||(40674901-40674975)
chr7 (650-723)||(21314901-21314975)
chr7 (718-763)||(10526305-10526350)
chr7 (726-763)||(35147100-35147137)
chr7 (727-763)||(8417347-8417383)
chr7 (727-763)||(34037322-34037358)
chr7 (729-763)||(31075604-31075638)
chr7 (722-763)||(36423811-36423852)
chr7 (722-763)||(41453416-41453457)
[»] scaffold0221 (1 HSPs)
scaffold0221 (715-763)||(8420-8468)
[»] chr6 (5 HSPs)
chr6 (727-763)||(7438807-7438843)
chr6 (727-761)||(5310829-5310863)
chr6 (721-763)||(32993426-32993468)
chr6 (722-763)||(2517000-2517041)
chr6 (722-763)||(6235919-6235960)


Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 32 - 449
Target Start/End: Original strand, 7774606 - 7775029
Alignment:
Q  32 actagatcttctgcccgtgctgccgcacgggtcataaacatctttgcaaaataatgtactacattacaatccatcacttgtacaactaattatttcttca 131  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  7774606 actagatcttctaccagtgctgccgcacgggtcataaacatctttgcaaaataccgtactacattacaatccatcacttgtacaactaattatttcttca 7774705  T
Q  132 acgttggatgtctaaatattttgaaaaatctctttatatatt---acatttgatgttgatgcaatcgccattttcatcgatcaataaaattttaatacca 228  Q
    || |||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||| |||||||||||| ||||| |||||||||| ||||    
T  7774706 acattggatgtctaaatattttgaaaaatctctttatatattattacatttgatgttgatgcaatggccattttcatcaatcaacaaaattttaagacca 7774805  T
Q  229 atgggaaaccgcaagtattgtggatggatgtgatttcagattagggtgccaaacacaatggctcgacaaccatggacattggaaaacaggcaagtgttta 328  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7774806 atgggaaaccgcaagtattatggatggatgtgatttcagattagggtgccaaacacaatggctcgacaaccatggacattggaaaacaggcaagtgttta 7774905  T
Q  329 gcttaagatacctttagagcatacttatcttgagtgtcgcatagggtaaaaca---actcgcattgtgcaccgtaaatccatataactcctgaattaaat 425  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||   ||||||||| |||||||||||| |||||||||||||||||||||    
T  7774906 gcttaagatacctttagagcatacttatcttgagtgtcgcatagggtacaacaattactcgcattttgcaccgtaaattcatataactcctgaattaaat 7775005  T
Q  426 caagacccaccaattgttaagaaa 449  Q
    ||| |||||||||||| |||||||    
T  7775006 caaaacccaccaattgataagaaa 7775029  T

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Target: chr4; HSP #2
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 794 - 899
Target Start/End: Original strand, 7775262 - 7775367
Alignment:
Q  794 tttataaaatctcctcatcaaatgaagagactaaagtcttattcatccaccaataacgttagaaattgttgtattatgaggacttgcaatttcacatgat 893  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7775262 tttataaaatctccttatcaaatgaagagactaaagtcttattcatccaccaataacgttagatattgttgtattatgaggacttgcaatttcacatgat 7775361  T
Q  894 attcac 899  Q
    ||||||    
T  7775362 attcac 7775367  T

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Target: chr4; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 629 - 723
Target Start/End: Original strand, 7775154 - 7775248
Alignment:
Q  629 ataaaatatgacatgttccctttttgtcacctgcaagaagttttcacaaagtgaaaatcaaatcaatgtatatttcagagttagagtattaaata 723  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7775154 ataaaatatgacatgttccctttttgtcacctgcaagaagttttcacaaagtgaaaatcaaatcaatgtatatctcagagttagagtattaaata 7775248  T

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Target: chr4; HSP #4
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 490 - 575
Target Start/End: Original strand, 7775031 - 7775116
Alignment:
Q  490 tgtaacatgtaagagagaataacatgagggagaaaaacactgttgaactaactaaaagtaagaaacataacacttgcacttccttc 575  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  7775031 tgtaacatgtaagagagaataacatgagggagaaaaacattgttgaactaactaaaagtaagaaacataacacttgcagttccttc 7775116  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 794 - 893
Target Start/End: Original strand, 15553490 - 15553589
Alignment:
Q  794 tttataaaatctcctcatcaaatgaagagactaaagtcttattcatccaccaataacgttagaaattgttgtattatgaggacttgcaatttcacatgat 893  Q
    ||||||||||||||| | ||||||||||||||||| ||||| ||| ||||||||||| |||| |||||||| ||| ||||||| ||||| | ||||||||    
T  15553490 tttataaaatctccttaccaaatgaagagactaaactcttactcacccaccaataacattagcaattgttgcattgtgaggacctgcaactgcacatgat 15553589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 794 - 893
Target Start/End: Complemental strand, 53577216 - 53577117
Alignment:
Q  794 tttataaaatctcctcatcaaatgaagagactaaagtcttattcatccaccaataacgttagaaattgttgtattatgaggacttgcaatttcacatgat 893  Q
    ||||||||||||||| | ||||||||||||||||| ||||| ||| ||||||||||| |||| |||||||| ||| ||||||| ||||| | ||||||||    
T  53577216 tttataaaatctccttaccaaatgaagagactaaactcttactcacccaccaataacattagcaattgttgcattgtgaggacatgcaactgcacatgat 53577117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 656 - 703
Target Start/End: Original strand, 15553403 - 15553450
Alignment:
Q  656 cacctgcaagaagttttcacaaagtgaaaatcaaatcaatgtatattt 703  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  15553403 cacctgctagaagttttcacaaagtgaaaatcaaatcaatgtatattt 15553450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 656 - 703
Target Start/End: Complemental strand, 53577303 - 53577256
Alignment:
Q  656 cacctgcaagaagttttcacaaagtgaaaatcaaatcaatgtatattt 703  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  53577303 cacctgctagaagttttcacaaagtgaaaatcaaatcaatgtatattt 53577256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 721 - 763
Target Start/End: Complemental strand, 44991731 - 44991689
Alignment:
Q  721 ataggttaaattatcgttttggtcctctaactatttaattggt 763  Q
    ||||| ||||||||| |||||||||||||||||||||||||||    
T  44991731 ataggctaaattatctttttggtcctctaactatttaattggt 44991689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 721 - 763
Target Start/End: Original strand, 47602940 - 47602982
Alignment:
Q  721 ataggttaaattatcgttttggtcctctaactatttaattggt 763  Q
    ||||| ||||||||| |||||||||||||||||||||||||||    
T  47602940 ataggctaaattatctttttggtcctctaactatttaattggt 47602982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 727 - 763
Target Start/End: Complemental strand, 52557534 - 52557498
Alignment:
Q  727 taaattatcgttttggtcctctaactatttaattggt 763  Q
    ||||||||| |||||||||||||||||||||||||||    
T  52557534 taaattatctttttggtcctctaactatttaattggt 52557498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 727 - 763
Target Start/End: Complemental strand, 53259585 - 53259549
Alignment:
Q  727 taaattatcgttttggtcctctaactatttaattggt 763  Q
    ||||||||| |||||||||||||||||||||||||||    
T  53259585 taaattatctttttggtcctctaactatttaattggt 53259549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 721 - 763
Target Start/End: Original strand, 24898186 - 24898228
Alignment:
Q  721 ataggttaaattatcgttttggtcctctaactatttaattggt 763  Q
    |||||||||||||   |||||||||||||||||||||||||||    
T  24898186 ataggttaaattacatttttggtcctctaactatttaattggt 24898228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 721 - 763
Target Start/End: Complemental strand, 53995388 - 53995346
Alignment:
Q  721 ataggttaaattatcgttttggtcctctaactatttaattggt 763  Q
    ||||| ||||||| | |||||||||||||||||||||||||||    
T  53995388 ataggctaaattacctttttggtcctctaactatttaattggt 53995346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 722 - 763
Target Start/End: Complemental strand, 47603813 - 47603772
Alignment:
Q  722 taggttaaattatcgttttggtcctctaactatttaattggt 763  Q
    |||| ||||||| | |||||||||||||||||||||||||||    
T  47603813 taggctaaattacctttttggtcctctaactatttaattggt 47603772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 1e-22; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 794 - 893
Target Start/End: Original strand, 11155533 - 11155632
Alignment:
Q  794 tttataaaatctcctcatcaaatgaagagactaaagtcttattcatccaccaataacgttagaaattgttgtattatgaggacttgcaatttcacatgat 893  Q
    ||||||||||||||| ||||||||||||||||||| ||||| ||| ||||||||||| |||| |||||||| ||| ||||||| ||||| | ||||||||    
T  11155533 tttataaaatctccttatcaaatgaagagactaaactcttactcacccaccaataacattagcaattgttgcattgtgaggacctgcaactgcacatgat 11155632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 794 - 893
Target Start/End: Original strand, 11160433 - 11160532
Alignment:
Q  794 tttataaaatctcctcatcaaatgaagagactaaagtcttattcatccaccaataacgttagaaattgttgtattatgaggacttgcaatttcacatgat 893  Q
    ||||||||||||||| ||||||||||||||||||| ||||| ||| ||||||||||| |||| |||||||| ||| ||||||| ||||| | ||||||||    
T  11160433 tttataaaatctccttatcaaatgaagagactaaactcttactcacccaccaataacattagcaattgttgcattgtgaggacctgcaactgcacatgat 11160532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 794 - 893
Target Start/End: Complemental strand, 39925751 - 39925652
Alignment:
Q  794 tttataaaatctcctcatcaaatgaagagactaaagtcttattcatccaccaataacgttagaaattgttgtattatgaggacttgcaatttcacatgat 893  Q
    ||||||||||||||| | ||||||||||||||||| ||||| ||| ||||||||||| |||| |||||||| ||| ||||||| ||||| | ||||||||    
T  39925751 tttataaaatctccttaccaaatgaagagactaaactcttactcacccaccaataacattagcaattgttgcattgtgaggacctgcaactgcacatgat 39925652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 271 - 362
Target Start/End: Original strand, 28208716 - 28208807
Alignment:
Q  271 agggtgccaaacacaatggctcgacaaccatggacattggaaaacaggcaagtgtttagcttaagatacctttagagcatacttatcttgag 362  Q
    |||||||||||||||||| |||||||||||||||||||| ||||| |  ||| |||| ||| |||| || |||||||||| | |||||||||    
T  28208716 agggtgccaaacacaatgtctcgacaaccatggacattgaaaaacggaaaagagtttggctcaagaaacatttagagcatgcctatcttgag 28208807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 656 - 703
Target Start/End: Original strand, 34108865 - 34108912
Alignment:
Q  656 cacctgcaagaagttttcacaaagtgaaaatcaaatcaatgtatattt 703  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  34108865 cacctgctagaagttttcacaaagtgaaaatcaaatcaatgtatattt 34108912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 656 - 703
Target Start/End: Complemental strand, 39925838 - 39925791
Alignment:
Q  656 cacctgcaagaagttttcacaaagtgaaaatcaaatcaatgtatattt 703  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39925838 cacctgctagaagttttcacaaagtgaaaatcaaatcaatgtatattt 39925791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 656 - 703
Target Start/End: Complemental strand, 43621508 - 43621461
Alignment:
Q  656 cacctgcaagaagttttcacaaagtgaaaatcaaatcaatgtatattt 703  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  43621508 cacctgctagaagttttcacaaagtgaaaatcaaatcaatgtatattt 43621461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 656 - 703
Target Start/End: Original strand, 11155446 - 11155493
Alignment:
Q  656 cacctgcaagaagttttcacaaagtgaaaatcaaatcaatgtatattt 703  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  11155446 cacctgctagaagttttcacagagtgaaaatcaaatcaatgtatattt 11155493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 656 - 703
Target Start/End: Original strand, 40234138 - 40234185
Alignment:
Q  656 cacctgcaagaagttttcacaaagtgaaaatcaaatcaatgtatattt 703  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  40234138 cacctgctagaagttttcacagagtgaaaatcaaatcaatgtatattt 40234185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 794 - 864
Target Start/End: Complemental strand, 43621421 - 43621351
Alignment:
Q  794 tttataaaatctcctcatcaaatgaagagactaaagtcttattcatccaccaataacgttagaaattgttg 864  Q
    |||||||||||| || | ||||||||||||||||| ||||| ||| ||||||||||| |||| ||||||||    
T  43621421 tttataaaatctacttaccaaatgaagagactaaactcttactcacccaccaataacattagcaattgttg 43621351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 794 - 891
Target Start/End: Original strand, 40234225 - 40234321
Alignment:
Q  794 tttataaaatctcctcatcaaatgaagagactaaagtcttattcatccaccaataacgttagaaattgttgtattatgaggacttgcaatttcacatg 891  Q
    ||||||||| ||||| | ||||||||||||||||| ||||| ||| ||| ||||||| |||| |||||||| ||| ||||||| ||||| | ||||||    
T  40234225 tttataaaa-ctccttaccaaatgaagagactaaattcttactcacccatcaataacattagcaattgttgcattgtgaggacatgcaactgcacatg 40234321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 722 - 763
Target Start/End: Original strand, 23598070 - 23598111
Alignment:
Q  722 taggttaaattatcgttttggtcctctaactatttaattggt 763  Q
    |||| ||||||||| |||||||||||||||||||||||||||    
T  23598070 taggctaaattatctttttggtcctctaactatttaattggt 23598111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 722 - 763
Target Start/End: Complemental strand, 49644122 - 49644081
Alignment:
Q  722 taggttaaattatcgttttggtcctctaactatttaattggt 763  Q
    |||| ||||||||| |||||||||||||||||||||||||||    
T  49644122 taggctaaattatctttttggtcctctaactatttaattggt 49644081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 723 - 763
Target Start/End: Original strand, 9006190 - 9006230
Alignment:
Q  723 aggttaaattatcgttttggtcctctaactatttaattggt 763  Q
    ||||| ||||||| |||||||||||||||||||||||||||    
T  9006190 aggtttaattatctttttggtcctctaactatttaattggt 9006230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 727 - 763
Target Start/End: Complemental strand, 49140589 - 49140553
Alignment:
Q  727 taaattatcgttttggtcctctaactatttaattggt 763  Q
    ||||||||| |||||||||||||||||||||||||||    
T  49140589 taaattatctttttggtcctctaactatttaattggt 49140553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 721 - 763
Target Start/End: Original strand, 20305999 - 20306041
Alignment:
Q  721 ataggttaaattatcgttttggtcctctaactatttaattggt 763  Q
    ||||||| ||||| | |||||||||||||||||||||||||||    
T  20305999 ataggtttaattacctttttggtcctctaactatttaattggt 20306041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 722 - 759
Target Start/End: Complemental strand, 5537256 - 5537219
Alignment:
Q  722 taggttaaattatcgttttggtcctctaactatttaat 759  Q
    |||||||||||||  |||||||||||||||||||||||    
T  5537256 taggttaaattatatttttggtcctctaactatttaat 5537219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 722 - 763
Target Start/End: Complemental strand, 37304480 - 37304439
Alignment:
Q  722 taggttaaattatcgttttggtcctctaactatttaattggt 763  Q
    |||||||||||||  |||||| ||||||||||||||||||||    
T  37304480 taggttaaattatttttttggccctctaactatttaattggt 37304439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 722 - 763
Target Start/End: Original strand, 39486200 - 39486241
Alignment:
Q  722 taggttaaattatcgttttggtcctctaactatttaattggt 763  Q
    |||| ||||||||| ||||||| |||||||||||||||||||    
T  39486200 tagggtaaattatctttttggttctctaactatttaattggt 39486241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 794 - 893
Target Start/End: Original strand, 4581 - 4680
Alignment:
Q  794 tttataaaatctcctcatcaaatgaagagactaaagtcttattcatccaccaataacgttagaaattgttgtattatgaggacttgcaatttcacatgat 893  Q
    ||||||||||||||| | ||||||||||||||||| ||||| ||| ||||||||||| |||| |||||||| ||| ||||||| ||||| | ||||||||    
T  4581 tttataaaatctccttaccaaatgaagagactaaactcttactcacccaccaataacattagcaattgttgcattgtgaggacctgcaactgcacatgat 4680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 656 - 703
Target Start/End: Original strand, 4494 - 4541
Alignment:
Q  656 cacctgcaagaagttttcacaaagtgaaaatcaaatcaatgtatattt 703  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4494 cacctgctagaagttttcacaaagtgaaaatcaaatcaatgtatattt 4541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 794 - 893
Target Start/End: Complemental strand, 13087418 - 13087319
Alignment:
Q  794 tttataaaatctcctcatcaaatgaagagactaaagtcttattcatccaccaataacgttagaaattgttgtattatgaggacttgcaatttcacatgat 893  Q
    ||||||||||||||| | ||||||||||||||||| ||||| ||| ||||||||||| |||| |||||||| ||| ||||||| ||||| | ||||||||    
T  13087418 tttataaaatctccttaccaaatgaagagactaaactcttactcacccaccaataacattagcaattgttgcattgtgaggacctgcaactgcacatgat 13087319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 794 - 893
Target Start/End: Complemental strand, 41495474 - 41495375
Alignment:
Q  794 tttataaaatctcctcatcaaatgaagagactaaagtcttattcatccaccaataacgttagaaattgttgtattatgaggacttgcaatttcacatgat 893  Q
    ||||||||||||||| | ||||||||||||||||| ||||| ||| ||||||||||| |||| |||||||| ||| ||||||| ||||| | ||||||||    
T  41495474 tttataaaatctccttaccaaatgaagagactaaactcttactcacccaccaataacattagcaattgttgcattgtgaggacctgcaactgcacatgat 41495375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 656 - 703
Target Start/End: Complemental strand, 13087505 - 13087458
Alignment:
Q  656 cacctgcaagaagttttcacaaagtgaaaatcaaatcaatgtatattt 703  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13087505 cacctgctagaagttttcacaaagtgaaaatcaaatcaatgtatattt 13087458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 656 - 703
Target Start/End: Complemental strand, 41495561 - 41495514
Alignment:
Q  656 cacctgcaagaagttttcacaaagtgaaaatcaaatcaatgtatattt 703  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41495561 cacctgctagaagttttcacaaagtgaaaatcaaatcaatgtatattt 41495514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 723 - 763
Target Start/End: Original strand, 7949411 - 7949451
Alignment:
Q  723 aggttaaattatcgttttggtcctctaactatttaattggt 763  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  7949411 aggttaaattatctttttggtcctctaactatttaattggt 7949451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 727 - 763
Target Start/End: Complemental strand, 7535280 - 7535244
Alignment:
Q  727 taaattatcgttttggtcctctaactatttaattggt 763  Q
    ||||||||| |||||||||||||||||||||||||||    
T  7535280 taaattatctttttggtcctctaactatttaattggt 7535244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 727 - 763
Target Start/End: Complemental strand, 45277043 - 45277007
Alignment:
Q  727 taaattatcgttttggtcctctaactatttaattggt 763  Q
    ||||||||| |||||||||||||||||||||||||||    
T  45277043 taaattatctttttggtcctctaactatttaattggt 45277007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 724 - 763
Target Start/End: Complemental strand, 11174084 - 11174045
Alignment:
Q  724 ggttaaattatcgttttggtcctctaactatttaattggt 763  Q
    |||||||||| | |||||||||||||||||||||||||||    
T  11174084 ggttaaattacctttttggtcctctaactatttaattggt 11174045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 722 - 763
Target Start/End: Complemental strand, 22763385 - 22763344
Alignment:
Q  722 taggttaaattatcgttttggtcctctaactatttaattggt 763  Q
    |||| ||||||| | |||||||||||||||||||||||||||    
T  22763385 taggctaaattacctttttggtcctctaactatttaattggt 22763344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 722 - 763
Target Start/End: Complemental strand, 33296136 - 33296095
Alignment:
Q  722 taggttaaattatcgttttggtcctctaactatttaattggt 763  Q
    |||| ||||||| | |||||||||||||||||||||||||||    
T  33296136 taggctaaattacctttttggtcctctaactatttaattggt 33296095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 794 - 893
Target Start/End: Original strand, 2395637 - 2395736
Alignment:
Q  794 tttataaaatctcctcatcaaatgaagagactaaagtcttattcatccaccaataacgttagaaattgttgtattatgaggacttgcaatttcacatgat 893  Q
    ||||||||||||||| | ||||||||||||||||| ||||| ||| ||||||||||| |||| |||||||| ||| ||||||| ||||| | ||||||||    
T  2395637 tttataaaatctccttaccaaatgaagagactaaactcttactcacccaccaataacattagcaattgttgcattgtgaggacctgcaactgcacatgat 2395736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 794 - 893
Target Start/End: Complemental strand, 7479711 - 7479612
Alignment:
Q  794 tttataaaatctcctcatcaaatgaagagactaaagtcttattcatccaccaataacgttagaaattgttgtattatgaggacttgcaatttcacatgat 893  Q
    ||||||||||||||| | ||||||||||||||||| ||||| ||| ||||||||||| |||| |||||||| ||| ||||||| ||||| | ||||||||    
T  7479711 tttataaaatctccttaccaaatgaagagactaaactcttactcacccaccaataacattagcaattgttgcattgtgaggacctgcaactgcacatgat 7479612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 794 - 893
Target Start/End: Complemental strand, 34762414 - 34762315
Alignment:
Q  794 tttataaaatctcctcatcaaatgaagagactaaagtcttattcatccaccaataacgttagaaattgttgtattatgaggacttgcaatttcacatgat 893  Q
    ||||||||||||||| | ||||||||||||||||| ||||| ||| ||||||||||| |||| |||||||| ||| |||||| |||||| | ||||||||    
T  34762414 tttataaaatctccttaccaaatgaagagactaaactcttactcacccaccaataacattagcaattgttgcattgtgaggatttgcaactgcacatgat 34762315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 794 - 893
Target Start/End: Complemental strand, 23777531 - 23777432
Alignment:
Q  794 tttataaaatctcctcatcaaatgaagagactaaagtcttattcatccaccaataacgttagaaattgttgtattatgaggacttgcaatttcacatgat 893  Q
    ||||||||||||||| | ||||||||||||||||| ||||| ||| |||| |||||| |||| |||||||| ||| ||||||| ||||| | ||||||||    
T  23777531 tttataaaatctccttaccaaatgaagagactaaactcttactcacccactaataacattagcaattgttgcattgtgaggacctgcaactgcacatgat 23777432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 794 - 893
Target Start/End: Complemental strand, 23864484 - 23864385
Alignment:
Q  794 tttataaaatctcctcatcaaatgaagagactaaagtcttattcatccaccaataacgttagaaattgttgtattatgaggacttgcaatttcacatgat 893  Q
    ||||||||||||||| | ||||||||||||||||| ||||| ||| |||| |||||| |||| |||||||| ||| ||||||| ||||| | ||||||||    
T  23864484 tttataaaatctccttaccaaatgaagagactaaactcttactcacccactaataacattagcaattgttgcattgtgaggacctgcaactgcacatgat 23864385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 794 - 893
Target Start/End: Complemental strand, 24349236 - 24349137
Alignment:
Q  794 tttataaaatctcctcatcaaatgaagagactaaagtcttattcatccaccaataacgttagaaattgttgtattatgaggacttgcaatttcacatgat 893  Q
    |||| |||||||||| | ||||||||||||||||| ||||| ||| ||||||||||| |||| |||||||| ||| ||||||| ||||| | ||||||||    
T  24349236 tttacaaaatctccttaccaaatgaagagactaaactcttactcacccaccaataacattagcaattgttgcattgtgaggacatgcaactgcacatgat 24349137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 629 - 703
Target Start/End: Complemental strand, 23777645 - 23777571
Alignment:
Q  629 ataaaatatgacatgttccctttttgtcacctgcaagaagttttcacaaagtgaaaatcaaatcaatgtatattt 703  Q
    |||||||||  |||| || |||||  |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23777645 ataaaatatagcatgatcacttttcatcacctgctagaagttttcacaaagtgaaaatcaaatcaatgtatattt 23777571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 629 - 703
Target Start/End: Complemental strand, 23864598 - 23864524
Alignment:
Q  629 ataaaatatgacatgttccctttttgtcacctgcaagaagttttcacaaagtgaaaatcaaatcaatgtatattt 703  Q
    |||||||||  |||| || |||||  |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23864598 ataaaatatagcatgatcacttttcatcacctgctagaagttttcacaaagtgaaaatcaaatcaatgtatattt 23864524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 794 - 891
Target Start/End: Original strand, 24328109 - 24328206
Alignment:
Q  794 tttataaaatctcctcatcaaatgaagagactaaagtcttattcatccaccaataacgttagaaattgttgtattatgaggacttgcaatttcacatg 891  Q
    |||| |||||||||| | ||||||||||||||||| ||||| ||| ||||||||||| |||| |||||||| ||| ||||||| ||||| | ||||||    
T  24328109 tttacaaaatctccttaccaaatgaagagactaaactcttactcacccaccaataacattagcaattgttgcattgtgaggacatgcaactgcacatg 24328206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 794 - 882
Target Start/End: Complemental strand, 39872488 - 39872400
Alignment:
Q  794 tttataaaatctcctcatcaaatgaagagactaaagtcttattcatccaccaataacgttagaaattgttgtattatgaggacttgcaa 882  Q
    |||| |||||||||| | ||||||||||||||||| ||||| ||| ||||||||||| |||| |||||||| ||| ||||||| |||||    
T  39872488 tttaaaaaatctccttaccaaatgaagagactaaactcttactcacccaccaataacattagcaattgttgcattgtgaggacctgcaa 39872400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 656 - 703
Target Start/End: Original strand, 2395550 - 2395597
Alignment:
Q  656 cacctgcaagaagttttcacaaagtgaaaatcaaatcaatgtatattt 703  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2395550 cacctgctagaagttttcacaaagtgaaaatcaaatcaatgtatattt 2395597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 656 - 703
Target Start/End: Original strand, 24328022 - 24328069
Alignment:
Q  656 cacctgcaagaagttttcacaaagtgaaaatcaaatcaatgtatattt 703  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24328022 cacctgctagaagttttcacaaagtgaaaatcaaatcaatgtatattt 24328069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 656 - 703
Target Start/End: Complemental strand, 24349323 - 24349276
Alignment:
Q  656 cacctgcaagaagttttcacaaagtgaaaatcaaatcaatgtatattt 703  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24349323 cacctgctagaagttttcacaaagtgaaaatcaaatcaatgtatattt 24349276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 656 - 703
Target Start/End: Complemental strand, 39872575 - 39872528
Alignment:
Q  656 cacctgcaagaagttttcacaaagtgaaaatcaaatcaatgtatattt 703  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39872575 cacctgctagaagttttcacaaagtgaaaatcaaatcaatgtatattt 39872528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 658 - 702
Target Start/End: Complemental strand, 7479796 - 7479752
Alignment:
Q  658 cctgcaagaagttttcacaaagtgaaaatcaaatcaatgtatatt 702  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  7479796 cctgctagaagttttcacaaagtgaaaatcaaatcaatgtatatt 7479752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 658 - 703
Target Start/End: Complemental strand, 34762499 - 34762454
Alignment:
Q  658 cctgcaagaagttttcacaaagtgaaaatcaaatcaatgtatattt 703  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||    
T  34762499 cctgctagaagtttacacaaagtgaaaatcaaatcaatgtatattt 34762454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 727 - 763
Target Start/End: Complemental strand, 36440647 - 36440611
Alignment:
Q  727 taaattatcgttttggtcctctaactatttaattggt 763  Q
    ||||||||| |||||||||||||||||||||||||||    
T  36440647 taaattatctttttggtcctctaactatttaattggt 36440611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 723 - 764
Target Start/End: Complemental strand, 2597471 - 2597430
Alignment:
Q  723 aggttaaattatcgttttggtcctctaactatttaattggtt 764  Q
    ||||||||||||| |||||||||  |||||||||||||||||    
T  2597471 aggttaaattatctttttggtcccttaactatttaattggtt 2597430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 794 - 893
Target Start/End: Original strand, 42646659 - 42646758
Alignment:
Q  794 tttataaaatctcctcatcaaatgaagagactaaagtcttattcatccaccaataacgttagaaattgttgtattatgaggacttgcaatttcacatgat 893  Q
    ||||||||||||||| | ||||||||||||||||| ||||| ||| ||||||||||| |||| |||||||| ||| ||||||| ||||| | ||||||||    
T  42646659 tttataaaatctccttaccaaatgaagagactaaactcttactcacccaccaataacattagcaattgttgcattgtgaggacctgcaactgcacatgat 42646758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 794 - 893
Target Start/End: Original strand, 54319747 - 54319846
Alignment:
Q  794 tttataaaatctcctcatcaaatgaagagactaaagtcttattcatccaccaataacgttagaaattgttgtattatgaggacttgcaatttcacatgat 893  Q
    ||||||||||||||| | ||||||||||||||||| ||||| ||| ||||||||||| |||| |||||||| ||| ||||||| ||||| | ||||||||    
T  54319747 tttataaaatctccttaccaaatgaagagactaaactcttactcacccaccaataacattagcaattgttgcattgtgaggacctgcaactgcacatgat 54319846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 794 - 893
Target Start/End: Original strand, 965566 - 965665
Alignment:
Q  794 tttataaaatctcctcatcaaatgaagagactaaagtcttattcatccaccaataacgttagaaattgttgtattatgaggacttgcaatttcacatgat 893  Q
    ||||||||||||||| | |||||||||| |||||| ||||| ||| ||||||||||| |||| |||||||| ||| ||||||| ||||| | ||||||||    
T  965566 tttataaaatctccttaccaaatgaagacactaaactcttactcacccaccaataacattagcaattgttgcattgtgaggacctgcaactgcacatgat 965665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 794 - 893
Target Start/End: Original strand, 13453116 - 13453215
Alignment:
Q  794 tttataaaatctcctcatcaaatgaagagactaaagtcttattcatccaccaataacgttagaaattgttgtattatgaggacttgcaatttcacatgat 893  Q
    ||||||||||||||| | ||||||||||||||||| |||||  || ||||||||||| |||| |||||||| ||| ||||||| ||||| | ||||||||    
T  13453116 tttataaaatctccttaccaaatgaagagactaaactcttacacacccaccaataacattagcaattgttgcattgtgaggacctgcaactgcacatgat 13453215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 794 - 893
Target Start/End: Complemental strand, 35186000 - 35185901
Alignment:
Q  794 tttataaaatctcctcatcaaatgaagagactaaagtcttattcatccaccaataacgttagaaattgttgtattatgaggacttgcaatttcacatgat 893  Q
    ||||||||||||||| | ||||||||||||||||| ||||| | | ||||||||||| |||| |||||||| ||| ||||||| ||||| | ||||||||    
T  35186000 tttataaaatctccttaccaaatgaagagactaaactcttacttacccaccaataacattagcaattgttgcattgtgaggacctgcaactgcacatgat 35185901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 794 - 893
Target Start/End: Original strand, 49806886 - 49806985
Alignment:
Q  794 tttataaaatctcctcatcaaatgaagagactaaagtcttattcatccaccaataacgttagaaattgttgtattatgaggacttgcaatttcacatgat 893  Q
    ||||||||||||||| | ||||||||||||||||| ||||| ||| ||||||||||| |||| |||||||| |||  |||||| ||||| | ||||||||    
T  49806886 tttataaaatctccttaccaaatgaagagactaaactcttactcacccaccaataacattagcaattgttgcattgcgaggacctgcaactgcacatgat 49806985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 656 - 703
Target Start/End: Original strand, 965479 - 965526
Alignment:
Q  656 cacctgcaagaagttttcacaaagtgaaaatcaaatcaatgtatattt 703  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  965479 cacctgctagaagttttcacaaagtgaaaatcaaatcaatgtatattt 965526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 656 - 703
Target Start/End: Original strand, 49806798 - 49806845
Alignment:
Q  656 cacctgcaagaagttttcacaaagtgaaaatcaaatcaatgtatattt 703  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  49806798 cacctgctagaagttttcacaaagtgaaaatcaaatcaatgtatattt 49806845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 656 - 703
Target Start/End: Original strand, 54319660 - 54319707
Alignment:
Q  656 cacctgcaagaagttttcacaaagtgaaaatcaaatcaatgtatattt 703  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  54319660 cacctgctagaagttttcacaaagtgaaaatcaaatcaatgtatattt 54319707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 656 - 703
Target Start/End: Original strand, 13453029 - 13453076
Alignment:
Q  656 cacctgcaagaagttttcacaaagtgaaaatcaaatcaatgtatattt 703  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||    
T  13453029 cacctgctaaaagttttcacaaagtgaaaatcaaatcaatgtatattt 13453076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 656 - 703
Target Start/End: Original strand, 42646572 - 42646619
Alignment:
Q  656 cacctgcaagaagttttcacaaagtgaaaatcaaatcaatgtatattt 703  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  42646572 cacctgctagaagttttcataaagtgaaaatcaaatcaatgtatattt 42646619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 53556924 - 53556968
Alignment:
Q  45 cccgtgctgccgcacgggtcataaacatctttgcaaaataatgta 89  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||    
T  53556924 cccgtgctgccgcacgggtcatatacatctttgcaaaatattgta 53556968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 668 - 703
Target Start/End: Complemental strand, 35186075 - 35186040
Alignment:
Q  668 gttttcacaaagtgaaaatcaaatcaatgtatattt 703  Q
    ||||||||||||||||||||||||||||||||||||    
T  35186075 gttttcacaaagtgaaaatcaaatcaatgtatattt 35186040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 722 - 785
Target Start/End: Complemental strand, 15791556 - 15791487
Alignment:
Q  722 taggttaaattatcgttttggtcctctaactatttaattggt------tctctaactaaaaattgattta 785  Q
    |||| ||||||||  |||||||||||||||||||||||||||      ||||||||||||||||||||||    
T  15791556 taggctaaattatatttttggtcctctaactatttaattggtatcggatctctaactaaaaattgattta 15791487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 722 - 763
Target Start/End: Complemental strand, 12204003 - 12203962
Alignment:
Q  722 taggttaaattatcgttttggtcctctaactatttaattggt 763  Q
    |||||||||||| ||||||||||| |||||||||||||||||    
T  12204003 taggttaaattaccgttttggtcccctaactatttaattggt 12203962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 44751632 - 44751689
Alignment:
Q  32 actagatcttctgcccgtgctgccgcacgggtcataaacatctttgcaaaataatgta 89  Q
    |||||||| ||  ||| ||||||||||||||||||| |||||||||||||||| ||||    
T  44751632 actagatcatccacccatgctgccgcacgggtcatatacatctttgcaaaatattgta 44751689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 727 - 763
Target Start/End: Complemental strand, 12791623 - 12791587
Alignment:
Q  727 taaattatcgttttggtcctctaactatttaattggt 763  Q
    ||||||||| |||||||||||||||||||||||||||    
T  12791623 taaattatctttttggtcctctaactatttaattggt 12791587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 723 - 763
Target Start/End: Original strand, 15790678 - 15790718
Alignment:
Q  723 aggttaaattatcgttttggtcctctaactatttaattggt 763  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  15790678 aggttaaattatctttttggtcatctaactatttaattggt 15790718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 723 - 763
Target Start/End: Original strand, 29818176 - 29818216
Alignment:
Q  723 aggttaaattatcgttttggtcctctaactatttaattggt 763  Q
    ||||||||||| | |||||||||||||||||||||||||||    
T  29818176 aggttaaattacctttttggtcctctaactatttaattggt 29818216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 228
Target Start/End: Original strand, 44751789 - 44751873
Alignment:
Q  149 attttgaaaaatctctttatatattacatttgatgt-----tgatgcaatcgccattttcatcgatcaataaaattttaatacca 228  Q
    ||||||||||||||||| ||| |  |||||||||||     |||| ||||||||||||||||| ||||| |||||||||| ||||    
T  44751789 attttgaaaaatctcttgataaaccacatttgatgtagtattgatacaatcgccattttcatctatcaacaaaattttaagacca 44751873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 727 - 763
Target Start/End: Original strand, 54752166 - 54752202
Alignment:
Q  727 taaattatcgttttggtcctctaactatttaattggt 763  Q
    ||||||||| |||||||||||||||||||||||||||    
T  54752166 taaattatctttttggtcctctaactatttaattggt 54752202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 724 - 763
Target Start/End: Complemental strand, 8474296 - 8474257
Alignment:
Q  724 ggttaaattatcgttttggtcctctaactatttaattggt 763  Q
    |||||||||| | |||||||||||||||||||||||||||    
T  8474296 ggttaaattacctttttggtcctctaactatttaattggt 8474257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 720 - 763
Target Start/End: Original strand, 24428563 - 24428606
Alignment:
Q  720 aataggttaaattatcgttttggtcctctaactatttaattggt 763  Q
    |||||| ||||||||| ||||||||||||||||||| |||||||    
T  24428563 aataggctaaattatctttttggtcctctaactattcaattggt 24428606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 724 - 763
Target Start/End: Original strand, 27801489 - 27801528
Alignment:
Q  724 ggttaaattatcgttttggtcctctaactatttaattggt 763  Q
    |||||||||||  |||||||||||||||||||||||||||    
T  27801489 ggttaaattatatttttggtcctctaactatttaattggt 27801528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 722 - 761
Target Start/End: Complemental strand, 41835378 - 41835339
Alignment:
Q  722 taggttaaattatcgttttggtcctctaactatttaattg 761  Q
    |||||||||||| | |||||||||||||||||||||||||    
T  41835378 taggttaaattacctttttggtcctctaactatttaattg 41835339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 729 - 763
Target Start/End: Complemental strand, 22202061 - 22202027
Alignment:
Q  729 aattatcgttttggtcctctaactatttaattggt 763  Q
    ||||||| |||||||||||||||||||||||||||    
T  22202061 aattatctttttggtcctctaactatttaattggt 22202027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 729 - 763
Target Start/End: Complemental strand, 30681862 - 30681828
Alignment:
Q  729 aattatcgttttggtcctctaactatttaattggt 763  Q
    ||||||| |||||||||||||||||||||||||||    
T  30681862 aattatctttttggtcctctaactatttaattggt 30681828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 727 - 761
Target Start/End: Complemental strand, 32633512 - 32633478
Alignment:
Q  727 taaattatcgttttggtcctctaactatttaattg 761  Q
    ||||||||| |||||||||||||||||||||||||    
T  32633512 taaattatctttttggtcctctaactatttaattg 32633478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 44708224 - 44708262
Alignment:
Q  29 agtactagatcttctgcccgtgctgccgcacgggtcata 67  Q
    ||||||||||| ||| |||||||||||||||||||||||    
T  44708224 agtactagatcgtctacccgtgctgccgcacgggtcata 44708262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 722 - 763
Target Start/End: Original strand, 10505946 - 10505987
Alignment:
Q  722 taggttaaattatcgttttggtcctctaactatttaattggt 763  Q
    |||||| ||||| | |||||||||||||||||||||||||||    
T  10505946 taggtttaattacctttttggtcctctaactatttaattggt 10505987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 794 - 893
Target Start/End: Original strand, 15034638 - 15034737
Alignment:
Q  794 tttataaaatctcctcatcaaatgaagagactaaagtcttattcatccaccaataacgttagaaattgttgtattatgaggacttgcaatttcacatgat 893  Q
    ||||||||||||||| | ||||||||||||||||| ||||| ||| ||||||||||| |||| |||||||| ||| ||||||| ||||| | ||||||||    
T  15034638 tttataaaatctccttaccaaatgaagagactaaactcttactcacccaccaataacattagcaattgttgcattgtgaggacctgcaactgcacatgat 15034737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 794 - 893
Target Start/End: Original strand, 30408343 - 30408442
Alignment:
Q  794 tttataaaatctcctcatcaaatgaagagactaaagtcttattcatccaccaataacgttagaaattgttgtattatgaggacttgcaatttcacatgat 893  Q
    ||||||||||||||| | ||||||||||||||||| ||||| ||| ||||||||||| |||| |||||||| ||| ||||||| ||||| | ||||||||    
T  30408343 tttataaaatctccttaccaaatgaagagactaaactcttactcacccaccaataacattagcaattgttgcattgtgaggacctgcaactgcacatgat 30408442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 656 - 703
Target Start/End: Original strand, 15034551 - 15034598
Alignment:
Q  656 cacctgcaagaagttttcacaaagtgaaaatcaaatcaatgtatattt 703  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  15034551 cacctgctagaagttttcacaaagtgaaaatcaaatcaatgtatattt 15034598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 656 - 703
Target Start/End: Original strand, 30408256 - 30408303
Alignment:
Q  656 cacctgcaagaagttttcacaaagtgaaaatcaaatcaatgtatattt 703  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  30408256 cacctgctagaagttttcacaaagtgaaaatcaaatcaatgtatattt 30408303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 656 - 703
Target Start/End: Original strand, 45059358 - 45059405
Alignment:
Q  656 cacctgcaagaagttttcacaaagtgaaaatcaaatcaatgtatattt 703  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  45059358 cacctgctagaagttttcacaaagtgaaaatcaaatcaatgtatattt 45059405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 722 - 763
Target Start/End: Complemental strand, 8174337 - 8174296
Alignment:
Q  722 taggttaaattatcgttttggtcctctaactatttaattggt 763  Q
    |||| ||||||||| |||||||||||||||||||||||||||    
T  8174337 taggctaaattatctttttggtcctctaactatttaattggt 8174296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 722 - 763
Target Start/End: Original strand, 17032591 - 17032632
Alignment:
Q  722 taggttaaattatcgttttggtcctctaactatttaattggt 763  Q
    |||| ||||||||| |||||||||||||||||||||||||||    
T  17032591 taggctaaattatctttttggtcctctaactatttaattggt 17032632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 722 - 763
Target Start/End: Original strand, 17050927 - 17050968
Alignment:
Q  722 taggttaaattatcgttttggtcctctaactatttaattggt 763  Q
    |||| ||||||||| |||||||||||||||||||||||||||    
T  17050927 taggctaaattatctttttggtcctctaactatttaattggt 17050968  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 729 - 763
Target Start/End: Complemental strand, 38333125 - 38333091
Alignment:
Q  729 aattatcgttttggtcctctaactatttaattggt 763  Q
    ||||||| |||||||||||||||||||||||||||    
T  38333125 aattatctttttggtcctctaactatttaattggt 38333091  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 727 - 760
Target Start/End: Original strand, 8962363 - 8962396
Alignment:
Q  727 taaattatcgttttggtcctctaactatttaatt 760  Q
    ||||||||| ||||||||||||||||||||||||    
T  8962363 taaattatctttttggtcctctaactatttaatt 8962396  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 722 - 763
Target Start/End: Original strand, 24138066 - 24138107
Alignment:
Q  722 taggttaaattatcgttttggtcctctaactatttaattggt 763  Q
    |||| ||||||| | |||||||||||||||||||||||||||    
T  24138066 taggctaaattacctttttggtcctctaactatttaattggt 24138107  T

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Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 650 - 723
Target Start/End: Original strand, 40674901 - 40674975
Alignment:
Q  650 ttttgtcacctgcaagaagttttcacaaagtgaaaatcaaatcaatgtata-tttcagagttagagtattaaata 723  Q
    ||||| ||||||| ||||||||||||| |||||||||||||| |||||||| ||||||| ||||| || ||||||    
T  40674901 ttttgccacctgctagaagttttcacagagtgaaaatcaaattaatgtatattttcagaattagaataataaata 40674975  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 650 - 723
Target Start/End: Original strand, 21314901 - 21314975
Alignment:
Q  650 ttttgtcacctgcaagaagttttcacaaagtgaaaatcaaatcaatgtata-tttcagagttagagtattaaata 723  Q
    ||||| ||||||| ||||||||||||| |||||||||||||| ||| |||| ||||||| ||||| || ||||||    
T  21314901 ttttgccacctgctagaagttttcacagagtgaaaatcaaattaatatatattttcagaattagaataataaata 21314975  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 718 - 763
Target Start/End: Original strand, 10526305 - 10526350
Alignment:
Q  718 taaataggttaaattatcgttttggtcctctaactatttaattggt 763  Q
    |||||||| ||||||| | |||||||||||||||||||||||||||    
T  10526305 taaataggctaaattacctttttggtcctctaactatttaattggt 10526350  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 726 - 763
Target Start/End: Complemental strand, 35147137 - 35147100
Alignment:
Q  726 ttaaattatcgttttggtcctctaactatttaattggt 763  Q
    |||||||||| |||||||||||||||||||||||||||    
T  35147137 ttaaattatctttttggtcctctaactatttaattggt 35147100  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 727 - 763
Target Start/End: Complemental strand, 8417383 - 8417347
Alignment:
Q  727 taaattatcgttttggtcctctaactatttaattggt 763  Q
    ||||||||| |||||||||||||||||||||||||||    
T  8417383 taaattatctttttggtcctctaactatttaattggt 8417347  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 727 - 763
Target Start/End: Complemental strand, 34037358 - 34037322
Alignment:
Q  727 taaattatcgttttggtcctctaactatttaattggt 763  Q
    ||||||||| |||||||||||||||||||||||||||    
T  34037358 taaattatctttttggtcctctaactatttaattggt 34037322  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 729 - 763
Target Start/End: Complemental strand, 31075638 - 31075604
Alignment:
Q  729 aattatcgttttggtcctctaactatttaattggt 763  Q
    ||||||| |||||||||||||||||||||||||||    
T  31075638 aattatctttttggtcctctaactatttaattggt 31075604  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 722 - 763
Target Start/End: Complemental strand, 36423852 - 36423811
Alignment:
Q  722 taggttaaattatcgttttggtcctctaactatttaattggt 763  Q
    |||| ||||||| | |||||||||||||||||||||||||||    
T  36423852 taggctaaattacctttttggtcctctaactatttaattggt 36423811  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 722 - 763
Target Start/End: Complemental strand, 41453457 - 41453416
Alignment:
Q  722 taggttaaattatcgttttggtcctctaactatttaattggt 763  Q
    |||||||||||| | ||||||||||||||||||||| |||||    
T  41453457 taggttaaattacctttttggtcctctaactatttagttggt 41453416  T

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Target: scaffold0221 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 715 - 763
Target Start/End: Original strand, 8420 - 8468
Alignment:
Q  715 tattaaataggttaaattatcgttttggtcctctaactatttaattggt 763  Q
    |||||| |||| ||||||| | |||||||||||||||||||||||||||    
T  8420 tattaattaggctaaattacctttttggtcctctaactatttaattggt 8468  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 727 - 763
Target Start/End: Original strand, 7438807 - 7438843
Alignment:
Q  727 taaattatcgttttggtcctctaactatttaattggt 763  Q
    ||||||||| |||||||||||||||||||||||||||    
T  7438807 taaattatctttttggtcctctaactatttaattggt 7438843  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 727 - 761
Target Start/End: Original strand, 5310829 - 5310863
Alignment:
Q  727 taaattatcgttttggtcctctaactatttaattg 761  Q
    ||||||||| |||||||||||||||||||||||||    
T  5310829 taaattatctttttggtcctctaactatttaattg 5310863  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 721 - 763
Target Start/End: Complemental strand, 32993468 - 32993426
Alignment:
Q  721 ataggttaaattatcgttttggtcctctaactatttaattggt 763  Q
    ||||| ||||||||  |||||||||||||||||||||||||||    
T  32993468 ataggctaaattatatttttggtcctctaactatttaattggt 32993426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 722 - 763
Target Start/End: Original strand, 2517000 - 2517041
Alignment:
Q  722 taggttaaattatcgttttggtcctctaactatttaattggt 763  Q
    ||||||||||||   |||||||||||||||||||||||||||    
T  2517000 taggttaaattacatttttggtcctctaactatttaattggt 2517041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 722 - 763
Target Start/End: Original strand, 6235919 - 6235960
Alignment:
Q  722 taggttaaattatcgttttggtcctctaactatttaattggt 763  Q
    |||| ||||||| | |||||||||||||||||||||||||||    
T  6235919 taggctaaattacctttttggtcctctaactatttaattggt 6235960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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