View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0124-Insertion-5 (Length: 559)

Name: NF0124-Insertion-5
Description: NF0124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0124-Insertion-5
NF0124-Insertion-5
[»] chr2 (4 HSPs)
chr2 (7-559)||(39275201-39275753)
chr2 (39-199)||(20936091-20936251)
chr2 (39-199)||(20954332-20954492)
chr2 (37-199)||(20924479-20924641)
[»] chr1 (12 HSPs)
chr1 (38-197)||(3374067-3374226)
chr1 (38-189)||(3366361-3366512)
chr1 (37-194)||(3363966-3364123)
chr1 (40-197)||(3380195-3380352)
chr1 (124-300)||(3217057-3217233)
chr1 (22-194)||(2947194-2947363)
chr1 (39-197)||(4333560-4333718)
chr1 (22-175)||(3353325-3353475)
chr1 (107-192)||(2007913-2007998)
chr1 (37-194)||(2020980-2021137)
chr1 (124-196)||(1794136-1794208)
chr1 (101-193)||(3342696-3342788)
[»] chr4 (1 HSPs)
chr4 (26-193)||(21238858-21239025)


Alignment Details
Target: chr2 (Bit Score: 520; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 7 - 559
Target Start/End: Original strand, 39275201 - 39275753
Alignment:
Q  7 taaggaggcggatgtccatttaacactgggctcctattgttgggaagataccttttcagggccagccatgcccatccaagttcgacatgtgggcataggt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39275201 taaggaggcggatgtccatttaacactgggctcctattgttgggaagataccttttcagggccagccatgcccatccaagttcgacatgtgggcataggt 39275300  T
Q  107 ggcatcgctggcatcaaatctgaattagattttatcaaatttcttctcatgtattctcctatgctagaaaaaatgattgtgaagcctgttgaatacgcca 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39275301 ggcatcgctggcatcaaatctgaattagattttatcaaatttcttctcatgtattctcctatgctagaaaaaatgattgtgaagcctgttgaatacgcca 39275400  T
Q  207 gagccgatttgttgaccaaacttgttcggttcagaagagcatctgtacaagccgaagttatttacgaagggaaagactcttcataatgctttatatcttc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39275401 gagccgatttgttgaccaaacttgttcggttcagaagagcatctgtacaagccgaagttatttacgaagggaaagactcttcataatgctttatatcttc 39275500  T
Q  307 ctcatatcatcttatgtattataactctaggtggttatgacgtttaatcttttctaatgatgttgcaaattatgagtgatttaacattgaaatttctttt 406  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39275501 ctcatatcatcttatgtattataactataggtggttatgacatttaatcttttctaatgatgttgcaaattatgagtgatttaacattgaaatttctttt 39275600  T
Q  407 atatttatagtaaatttaaattaaatagtttccacctctcaaaattaaatattttctaannnnnnnagctaaatatattttctaatttatgctaaactaa 506  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  39275601 atatttatagtacatttaaattaaatagtttccacctctcaaaattaaatattttctaatttttttagctaaatatattttctaatttatgctaaactaa 39275700  T
Q  507 aatcaatgggatgcgtcagtttgaatagaagctgttacatgtgatttcatttg 559  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39275701 aatcaatgggatgcgtcagtttgaatagaagctgttacatgtgatttcatttg 39275753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 39 - 199
Target Start/End: Original strand, 20936091 - 20936251
Alignment:
Q  39 cctattgttgggaagataccttttcagggccagccatgcccatccaagttcgacatgtgggcataggtggcatcgctggcatcaaatctgaattagattt 138  Q
    |||||||||||||| | | |||||| | ||||||||||||||| | ||| |||||||||   |||| |||||||  ||| | |||||  |||||||||||    
T  20936091 cctattgttgggaaaaaatcttttcggcgccagccatgcccattcgagtgcgacatgtgacgatagatggcatctttggtaacaaattggaattagattt 20936190  T
Q  139 tatcaaatttcttctcatgtattctcctatgctagaaaaaatgattgtgaagcctgttgaa 199  Q
    |||||||||||| ||  | ||||||||| |||||||||| |||| ||||||||||||||||    
T  20936191 tatcaaatttctacttctatattctcctgtgctagaaaagatgactgtgaagcctgttgaa 20936251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 39 - 199
Target Start/End: Original strand, 20954332 - 20954492
Alignment:
Q  39 cctattgttgggaagataccttttcagggccagccatgcccatccaagttcgacatgtgggcataggtggcatcgctggcatcaaatctgaattagattt 138  Q
    ||||||||||||||||||  ||||| |  |||||||||||||| ||||| ||||||||||  || | |||||||  ||| | ||| |  |||||||||||    
T  20954332 cctattgttgggaagatatattttcggcaccagccatgcccattcaagtgcgacatgtggcgattgatggcatctttggtaccaatttggaattagattt 20954431  T
Q  139 tatcaaatttcttctcatgtattctcctatgctagaaaaaatgattgtgaagcctgttgaa 199  Q
    |||||||||||| ||  | |||||||| ||||||||||| |||| | ||||||||||||||    
T  20954432 tatcaaatttctacttctatattctcccatgctagaaaagatgactctgaagcctgttgaa 20954492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 37 - 199
Target Start/End: Original strand, 20924479 - 20924641
Alignment:
Q  37 ctcctattgttgggaagataccttttcagggccagccatgcccatccaagttcgacatgtgggcataggtggcatcgctggcatcaaatctgaattagat 136  Q
    |||||||||||||||||||| |||||| | |||||  |||| | || || | | ||||||||  |||   | |||| |||| | ||||||||||||||||    
T  20924479 ctcctattgttgggaagatatcttttcggagccagatatgctcctcaaattgcaacatgtggagatacaagacatctctggtaccaaatctgaattagat 20924578  T
Q  137 tttatcaaatttcttctcatgtattctcctatgctagaaaaaatgattgtgaagcctgttgaa 199  Q
    ||||||| |||||| ||  | ||||| ||| ||||  |||| ||||||||| |||||||||||    
T  20924579 tttatcagatttctacttctctattcacctgtgctcaaaaagatgattgtggagcctgttgaa 20924641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 38 - 197
Target Start/End: Original strand, 3374067 - 3374226
Alignment:
Q  38 tcctattgttgggaagataccttttcagggccagccatgcccatccaagttcgacatgtgggcataggtggcatcgctggcatcaaatctgaattagatt 137  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||| | |||||||   |||| ||||||| |||| |||| ||| ||||||||||    
T  3374067 tcctattgttgggaagatatcttttcagggccagccatgcccattcaagtacaacatgtgacaatagatggcatctctggtatcagatcagaattagatt 3374166  T
Q  138 ttatcaaatttcttctcatgtattctcctatgctagaaaaaatgattgtgaagcctgttg 197  Q
    ||||    ||||| ||    ||||||||| |||||||||| ||||||||||||| |||||    
T  3374167 ttattcggtttctacttcgatattctcctgtgctagaaaagatgattgtgaagcatgttg 3374226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 38 - 189
Target Start/End: Original strand, 3366361 - 3366512
Alignment:
Q  38 tcctattgttgggaagataccttttcagggccagccatgcccatccaagttcgacatgtgggcataggtggcatcgctggcatcaaatctgaattagatt 137  Q
    |||||||||| | |||||| |||||||||||||||||||||||| | ||| |||||||||   |||| ||||||| |||| |||||||| ||| ||||||    
T  3366361 tcctattgttcgtaagatatcttttcagggccagccatgcccattcgagtgcgacatgtgacaatagatggcatctctggtatcaaatcggaactagatt 3366460  T
Q  138 ttatcaaatttcttctcatgtattctcctatgctagaaaaaatgattgtgaa 189  Q
    ||||    ||||| ||    ||||||||||||||||| || |||||||||||    
T  3366461 ttattcggtttctacttcgctattctcctatgctagacaagatgattgtgaa 3366512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 37 - 194
Target Start/End: Original strand, 3363966 - 3364123
Alignment:
Q  37 ctcctattgttgggaagataccttttcagggccagccatgcccatccaagttcgacatgtgggcataggtggcatcgctggcatcaaatctgaattagat 136  Q
    |||||||||||||||| |||  ||||| | |||| | ||||||||  |||| ||||||||| | ||   ||||||| ||||| | |||||||||||||||    
T  3363966 ctcctattgttgggaaaatatattttcggagccaacaatgcccattgaagtgcgacatgtgaggatgcatggcatctctggctttaaatctgaattagat 3364065  T
Q  137 tttatcaaatttcttctcatgtattctcctatgctagaaaaaatgattgtgaagcctg 194  Q
    ||||||| |||||| ||  | ||||||||| | |||||||| ||||||||| ||||||    
T  3364066 tttatcagatttctgcttttatattctcctgtactagaaaagatgattgtggagcctg 3364123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 40 - 197
Target Start/End: Original strand, 3380195 - 3380352
Alignment:
Q  40 ctattgttgggaagataccttttcagggccagccatgcccatccaagttcgacatgtgggcataggtggcatcgctggcatcaaatctgaattagatttt 139  Q
    |||||||||||||| || ||||||| |||||| ||  ||||| | ||| |||||||||   |||| || |||| |||| |||||||| ||||||||||||    
T  3380195 ctattgttgggaagttatcttttcaaggccagtcaatcccattcgagtgcgacatgtgacaatagatgacatctctggtatcaaatcggaattagatttt 3380294  T
Q  140 atcaaatttcttctcatgtattctcctatgctagaaaaaatgattgtgaagcctgttg 197  Q
    ||    ||||| ||  | |||||||||||||||||||| ||||||||||||| |||||    
T  3380295 attcggtttctacttctctattctcctatgctagaaaagatgattgtgaagcatgttg 3380352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 124 - 300
Target Start/End: Complemental strand, 3217233 - 3217057
Alignment:
Q  124 atctgaattagattttatcaaatttcttctcatgtattctcctatgctagaaaaaatgattgtgaagcctgttgaatacgccagagccgatttgttgacc 223  Q
    |||||||||||||||||||| |||||| || ||||||||||| ||||||||||| ||||  ||||||| ||    | ||| || | |||| ||| ||||     
T  3217233 atctgaattagattttatcagatttctacttatgtattctcccatgctagaaaagatgacggtgaagcttgaaataaacgtcacacccgagttgatgaca 3217134  T
Q  224 aaacttgttcggttcagaagagcatctgtacaagccgaagttatttacgaagggaaagactcttcataatgctttat 300  Q
    ||| || ||| |||||  |||||||| | |||||| |||||||||||| ||| ||| || ||||| |||||||||||    
T  3217133 aaaattattcagttcaagagagcatcggaacaagctgaagttatttaccaagagaatgattcttcgtaatgctttat 3217057  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 194
Target Start/End: Complemental strand, 2947363 - 2947194
Alignment:
Q  22 ccatttaacactgggctcctattgttgggaagataccttttcagggccagccatgcccatccaagttcgacatgtgggcataggtggcatcgctggcatc 121  Q
    |||||||||||  | ||||||||||||| ||||||  ||||| |  ||| |||||||| ||  ||| | ||| ||| |||||||   |||  |||| |||    
T  2947363 ccatttaacacccgcctcctattgttggaaagatatattttcggatccatccatgcccctcggagtgcaacacgtgagcatagg---catttctggtatc 2947267  T
Q  122 aaatctgaattagattttatcaaatttcttctcatgtattctcctatgctagaaaaaatgattgtgaagcctg 194  Q
    |||||||||||||||||||||| |||||||||  |  ||||||| |||||||||||  |||||||| ||||||    
T  2947266 aaatctgaattagattttatcagatttcttcttctacattctccaatgctagaaaaggtgattgtggagcctg 2947194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 39 - 197
Target Start/End: Complemental strand, 4333718 - 4333560
Alignment:
Q  39 cctattgttgggaagataccttttcagggccagccatgcccatccaagttcgacatgtgggcataggtggcatcgctggcatcaaatctgaattagattt 138  Q
    |||||||||||||||||| || |||| |||  | ||||||  ||| ||| |||||||||   |||| ||||||| |||| | | | ||||||||| ||||    
T  4333718 cctattgttgggaagatatctcttcaaggctggtcatgccattccgagtgcgacatgtgacgatagatggcatctctggtacccagtctgaattaaattt 4333619  T
Q  139 tatcaaatttcttctcatgtattctcctatgctagaaaaaatgattgtgaagcctgttg 197  Q
     |||| |||||| ||  | |||||||   |||||||||| |||||||||||||||||||    
T  4333618 gatcagatttctacttctatattctctggtgctagaaaagatgattgtgaagcctgttg 4333560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 175
Target Start/End: Original strand, 3353325 - 3353475
Alignment:
Q  22 ccatttaacactgggctcctattgttgggaagataccttttcagggccagccatgcccatccaagttcgacatgtgggcataggtggcatcgctggcatc 121  Q
    |||||||||||  | ||||||||||||| ||||||  ||||| |  ||| |||||||| ||  ||| | ||| ||| |||||||   |||  |||| |||    
T  3353325 ccatttaacacccgcctcctattgttggaaagatatattttcggatccatccatgcccctcggagtgcaacacgtgagcatagg---catttctggtatc 3353421  T
Q  122 aaatctgaattagattttatcaaatttcttctcatgtattctcctatgctagaa 175  Q
    |||||||||||||||||||||| |||||||||  |  ||||||| |||||||||    
T  3353422 aaatctgaattagattttatcagatttcttcttctacattctccaatgctagaa 3353475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 107 - 192
Target Start/End: Original strand, 2007913 - 2007998
Alignment:
Q  107 ggcatcgctggcatcaaatctgaattagattttatcaaatttcttctcatgtattctcctatgctagaaaaaatgattgtgaagcc 192  Q
    |||||| |||||||||||||||||||||||||||| | |||||| ||  |  |||| ||| |||||||||| ||||  ||||||||    
T  2007913 ggcatctctggcatcaaatctgaattagattttatgagatttctacttctccattcgcctgtgctagaaaagatgagagtgaagcc 2007998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 37 - 194
Target Start/End: Original strand, 2020980 - 2021137
Alignment:
Q  37 ctcctattgttgggaagataccttttcagggccagccatgcccatccaagttcgacatgtgggcataggtggcatcgctggcatcaaatctgaattagat 136  Q
    |||||||||||||||| ||  |||||  | |||| |||| |||||||||||  |||||||| | || |  |||||| |||| || ||| |||||||||||    
T  2020980 ctcctattgttgggaaaatgtctttttggagccatccatacccatccaagtgtgacatgtgtgtattgaaggcatctctggtatgaaagctgaattagat 2021079  T
Q  137 tttatcaaatttcttctcatgtattctcctatgctagaaaaaatgattgtgaagcctg 194  Q
    ||| | | |||||| ||  | ||||| |||||||||||||| |||   ||||||||||    
T  2021080 tttttgagatttctacttctctattcgcctatgctagaaaagatggaagtgaagcctg 2021137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 1794136 - 1794208
Alignment:
Q  124 atctgaattagattttatcaaatttcttctcatgtattctcctatgctagaaaaaatgattgtgaagcctgtt 196  Q
    |||||||||||||||||||| |||||| ||  | ||||||||| | |||||| | |||| |||||||||||||    
T  1794136 atctgaattagattttatcagatttctacttctatattctcctgtcctagaacatatgactgtgaagcctgtt 1794208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 193
Target Start/End: Original strand, 3342696 - 3342788
Alignment:
Q  101 ataggtggcatcgctggcatcaaatctgaattagattttatcaaatttcttctcatgtattctcctatgctagaaaaaatgattgtgaagcct 193  Q
    |||| ||||||| |||| | |||||||||||||||||||||| ||||||| ||  | |||||||||   |||||||| ||| | |||||||||    
T  3342696 atagatggcatctctggtaccaaatctgaattagattttatccaatttctacttctatattctcctgatctagaaaagatgttcgtgaagcct 3342788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 193
Target Start/End: Original strand, 21238858 - 21239025
Alignment:
Q  26 ttaacactgggctcctattgttgggaagataccttttcagggccagccatgcccatccaagttcgacatgtgggcataggtggcatcgctggcatcaaat 125  Q
    ||||||| || |||||||||||||||||||| ||||||  |||||| ||||||| || |||| | ||||||    ||||     ||| ||||  |  |||    
T  21238858 ttaacaccggcctcctattgttgggaagatatcttttcccggccagacatgcccctcaaagtgcaacatgtaacaatagacataatctctggttttcaat 21238957  T
Q  126 ctgaattagattttatcaaatttcttctcatgtattctcctatgctagaaaaaatgattgtgaagcct 193  Q
    |||| ||||||||||||| |||||| ||  |  ||||||||||| ||||||| |||| ||||||||||    
T  21238958 ctgagttagattttatcagatttctacttctcaattctcctatgttagaaaagatgactgtgaagcct 21239025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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