View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0124-Insertion-6 (Length: 405)
Name: NF0124-Insertion-6
Description: NF0124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0124-Insertion-6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 8 - 405
Target Start/End: Original strand, 29297221 - 29297616
Alignment:
| Q |
8 |
ttcgggtctaaagattaggtcgaattaatgttaggatcgagttggaatcacataaaaccggacataatctctcatttgtatagccctactgcatagtttg |
107 |
Q |
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| T |
29297221 |
ttcgggtctaaagattaggtcgaattaatgttaggatcgagttggaatcacataaaaccggacataatctctcatttgtatagccctactgcatagtttg |
29297320 |
T |
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| Q |
108 |
gattgttcaaaatacctttatcattatcattagttgtctttccatcattcctcagtcgggttctattatgaatcattcacttaaaattagtatgtttata |
207 |
Q |
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| T |
29297321 |
gattgttcaaaatacctttatcattatcattagttgtctttccatcattcctcagtcgggttctattatgaatcattcacttaaaattagtatgtttata |
29297420 |
T |
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| Q |
208 |
aatttaaaaatggtttacacataaaacttgtggcaattttgtcttccttaaaagggtattcattggagataaataagtacttgaggaagcaaaacatgtg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29297421 |
aatttaaaaatggtttacacataaaacttgtggcaattttgtcttccttaaaagggtattcattggagataaataagtacttgaggaagcaaaacatgtg |
29297520 |
T |
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| Q |
308 |
taagnnnnnnncctttgtctttttgtaaaagcatgtgtaaggcttgttataactagagcttaatttgagagacagttatcttcccttgctcatatata |
405 |
Q |
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|||| || |||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29297521 |
taagtttttttcc--tgtctttttgtagaagcatgtgtaaggcttgttacaactagagctaaatttgagagacagttatcttcccttgctcatatata |
29297616 |
T |
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