View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0124_high_5 (Length: 272)
Name: NF0124_high_5
Description: NF0124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0124_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 18102006 - 18101744
Alignment:
| Q |
1 |
tgtttggatgcaagtttaaggaatattatctattacattgacactttgcaactatccacccgatgcagcttgcgaatgtttcgaaactccattatggcaa |
100 |
Q |
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| T |
18102006 |
tgtttggaggcaagtttaaggaatattatctattacattgacactttgcaattatccacccaatgcagcttgcgaatgtttcgaaactccattatggcaa |
18101907 |
T |
|
| Q |
101 |
tgagact--ggtgatnnnnnnnnttatatcgataatgattgattttgtagtgcatcaaactcttaggaaaggtaatatgtttaccgattatttctccaag |
198 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
18101906 |
tgagacaacggtgataaaaaaaattatatcgataatgattgattttgtagtgcatcacactcttaggaaaggtaatatgtttaccgattatttctccaag |
18101807 |
T |
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| Q |
199 |
cttggagcacaatcgaatagtggtatgtgactcttcttgatccatcggatgagcgtcattcat |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
18101806 |
cttggagcacaatcgaatagtggtatgtgactcttcttgatccatcggctgagcgtcattcat |
18101744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 37859614 - 37859352
Alignment:
| Q |
1 |
tgtttggatgcaagtttaaggaatattatctattacattgacactttgcaactatccacccgatgcagcttgcgaatgtttcgaaactccattatggcaa |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37859614 |
tgtttggaggcaagtttaaggaatattatctattacattgacactttgcaattatccacccaatgcagcttgcgaatgtttcgaaactccattatggcaa |
37859515 |
T |
|
| Q |
101 |
tgagact--ggtgatnnnnnnnnttatatcgataatgattgattttgtagtgcatcaaactcttaggaaaggtaatatgtttaccgattatttctccaag |
198 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
37859514 |
tgagacaacggtgataaaaaaaattatatcgataatgattgattttgtagtgcatcacactcttaggaaaggtaatatgtttaccgattatttctccaag |
37859415 |
T |
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| Q |
199 |
cttggagcacaatcgaatagtggtatgtgactcttcttgatccatcggatgagcgtcattcat |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37859414 |
cttggagcacaatcgaatagtggtatgtgactcttcttgatccatcggctgagcgtcattcat |
37859352 |
T |
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