View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0124_low_1 (Length: 659)

Name: NF0124_low_1
Description: NF0124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0124_low_1
NF0124_low_1
[»] chr1 (2 HSPs)
chr1 (22-322)||(6354184-6354491)
chr1 (385-568)||(6354573-6354759)
[»] chr2 (2 HSPs)
chr2 (83-140)||(3278204-3278261)
chr2 (86-141)||(28770613-28770668)
[»] chr4 (1 HSPs)
chr4 (83-130)||(37782077-37782124)
[»] chr8 (1 HSPs)
chr8 (99-141)||(31513184-31513227)
[»] chr5 (1 HSPs)
chr5 (103-141)||(30900069-30900108)
[»] scaffold0016 (1 HSPs)
scaffold0016 (85-140)||(102332-102387)
[»] chr6 (1 HSPs)
chr6 (86-130)||(33721398-33721441)


Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 22 - 322
Target Start/End: Original strand, 6354184 - 6354491
Alignment:
Q  22 gtgtgtttaatcttgtcaaaccaaaggaggaaacttttagtaattttagaggctaacgttattgggttggaaaacactttgtaaacaccttgg-tagtga 120  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  6354184 gtgtgtttaatcttgtcaaatcaaaggaggaaacttttagtaattttagaggctaacgttattgggttggaaaacactttgtaaacactttgggtagtga 6354283  T
Q  121 gatttcattagaggaaggat------attgacgagtttggtagcaaaaatggtggaaatcggctctttgaagaggtgtttcatgaataactccatcgatc 214  Q
    ||| ||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6354284 gatctcattagaggaaggatcaaaggattgacgagtttggtagcaaaaatggtggaaatcggctctttgaagaggtgtttcatgaataactccatcgatc 6354383  T
Q  215 ttttcctattttacgatttgcggatgatacnnnnnnnatttgtgaagggaattgagagaatttatggtgtcttaaatctgttactagaatctttgcattg 314  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6354384 ttttcctattttacgatttgcggatgatactttttttatttgtgaagggaattgagagaatttatggtgtcttaaatctgttactagaatctttgcattg 6354483  T
Q  315 atttcggg 322  Q
    ||||||||    
T  6354484 atttcggg 6354491  T

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Target: chr1; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 385 - 568
Target Start/End: Original strand, 6354573 - 6354759
Alignment:
Q  385 acattgttatattgatcaatttcctattaagttg---ggtattttgatgggtgccaatctaaggagagttgatacttggaagcctattgtgtcgtcgttg 481  Q
    |||||||||||||||||| |||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6354573 acattgttatattgatcattttcctattaagttgttcggtattttgatgggtgccaatctaaggagagttgatacttggaagcctattgtgtcgtcgttg 6354672  T
Q  482 atgaaaatgttgtctacttgttggaaaagtagacaattgtcaattagagagagtctgactttgattaactcagaattttcaatgatg 568  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6354673 atgaaaatgttgtctacttgttggaaaagtagacaattgtcaattagagagagtctgactttgattaactcagaattttcaatgatg 6354759  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 3278261 - 3278204
Alignment:
Q  83 ttgggttggaaaacactttgtaaacaccttgg-tagtgagatttcattagaggaaggat 140  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||| |||| ||||    
T  3278261 ttgggttggaaaaca-tttgtaaacaccttggatagtgagatttcattataggacggat 3278204  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 86 - 141
Target Start/End: Original strand, 28770613 - 28770668
Alignment:
Q  86 ggttggaaaacactttgtaaacaccttgg-tagtgagatttcattagaggaaggata 141  Q
    |||||||||||| |||||||||||||||| ||||||||| |||||||  ||||||||    
T  28770613 ggttggaaaaca-tttgtaaacaccttgggtagtgagatctcattagctgaaggata 28770668  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 130
Target Start/End: Complemental strand, 37782124 - 37782077
Alignment:
Q  83 ttgggttggaaaacactttgtaaacaccttgg-tagtgagatttcatta 130  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  37782124 ttgggttggaaaaca-tttgtaaacaccttgggtagtgagatttcatta 37782077  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 31513184 - 31513227
Alignment:
Q  99 tttgtaaacaccttgg-tagtgagatttcattagaggaaggata 141  Q
    |||||||||||||||  |||||||||||||||||||||||||||    
T  31513184 tttgtaaacaccttgaatagtgagatttcattagaggaaggata 31513227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 141
Target Start/End: Complemental strand, 30900108 - 30900069
Alignment:
Q  103 taaacaccttgg-tagtgagatttcattagaggaaggata 141  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  30900108 taaacaccttgggtagtgagatttcattagaggaaggata 30900069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 85 - 140
Target Start/End: Original strand, 102332 - 102387
Alignment:
Q  85 gggttggaaaacactttgtaaacaccttggta-gtgagatttcattagaggaaggat 140  Q
    ||||||||||||| |||| ||||||||||||| || |||||| ||||||||||||||    
T  102332 gggttggaaaaca-tttgaaaacaccttggtaagtaagattttattagaggaaggat 102387  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 33721398 - 33721441
Alignment:
Q  86 ggttggaaaacactttgtaaacaccttggtagtgagatttcatta 130  Q
    |||||| ||||| |||||||||||||| |||||||||||||||||    
T  33721398 ggttgggaaaca-tttgtaaacacctttgtagtgagatttcatta 33721441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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