View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0124_low_11 (Length: 209)
Name: NF0124_low_11
Description: NF0124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0124_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 52 - 146
Target Start/End: Original strand, 27313851 - 27313945
Alignment:
| Q |
52 |
gattgaaacctaatccatgttcgataataaagtaatgggctatgctaacgagcctattagtttagagtctattaggttttatatatatattctct |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27313851 |
gattgaaacctaatccatgttcgataataaagtaatgggctatgctaacgagcctattagtttagagtttattaggttttatatatatattctct |
27313945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 138
Target Start/End: Complemental strand, 11828017 - 11827948
Alignment:
| Q |
69 |
tgttcgataataaagtaatgggctatgctaacgagcctattagtttagagtctattaggttttatatata |
138 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11828017 |
tgttagataataaagtaatgggctatgctattaggcctattagtttagagtcaattaggttttatatata |
11827948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 139
Target Start/End: Original strand, 43516134 - 43516204
Alignment:
| Q |
69 |
tgttcgataataaagtaatgggctatgctaacgagcctattagtttagagtctattaggttttatatatat |
139 |
Q |
| |
|
|||| ||||||||| ||||||||||||||| | ||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
43516134 |
tgtttgataataaaataatgggctatgctattggtcctgttagtttagagtccattaggttttatatatat |
43516204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 28064728 - 28064690
Alignment:
| Q |
108 |
ttagtttagagtctattaggttttatatatatattctct |
146 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
28064728 |
ttagtttagagtccattaggttttatatttatattctct |
28064690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 139
Target Start/End: Original strand, 30435617 - 30435687
Alignment:
| Q |
69 |
tgttcgataataaagtaatgggctatgctaacgagcctattagtttagagtctattaggttttatatatat |
139 |
Q |
| |
|
|||| ||||||||||||||| ||||||||| | |||| | ||||||||| |||||||||||||||||| |
|
|
| T |
30435617 |
tgttagataataaagtaatgagctatgctattgggcctgtcggtttagagttcattaggttttatatatat |
30435687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1762 times since January 2019
Visitors: 1427