View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0124_low_2 (Length: 398)
Name: NF0124_low_2
Description: NF0124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0124_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 50 - 389
Target Start/End: Original strand, 8401211 - 8401539
Alignment:
| Q |
50 |
caatttattcattgaattagaaaatttcattcatttttatacttcgaacaaaatatccctttagaatcacgtaaattgcctagtgacttcgcgttcta-a |
148 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
8401211 |
caatttattcattgaattagaaaatttcactcatttttatacttcgaacaaaatatccctttagaatcacgtaaattgcctagtgacttcgcgttctata |
8401310 |
T |
|
| Q |
149 |
aaacagaaaaagtttatcctagatatacgagagaataggtatatgaaaatgtaatttatgttgatagttgaaaagaaaaattttacaaactacaattcgt |
248 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8401311 |
aaacagaaaaagtttatcctagatatatgagagaataggtatatgaaaatgtaatgtatgttgatagttgaaaagaaaaattttacaaactacaattcgt |
8401410 |
T |
|
| Q |
249 |
gcaacaagtttgttcaaacaattcctcnnnnnnnnngtttgttcaaataaatcatacaacaagctggtcttgtcttgtttattagttcctatcttgttca |
348 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8401411 |
gcaacaagtttgttcaaacaattcctc--aaaaaaagtttgttcaaat----------acaagctggtcttgtcttgtttattagttcctatcttgttca |
8401498 |
T |
|
| Q |
349 |
tggtgagagctctttccaccaagtgtccaagtcagtataat |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8401499 |
aggtgagagctctttccaccaagtgtccaagtcagtataat |
8401539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1656 times since January 2019
Visitors: 1426