View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0124_low_3 (Length: 397)
Name: NF0124_low_3
Description: NF0124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0124_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 50 - 388
Target Start/End: Original strand, 8401211 - 8401539
Alignment:
| Q |
50 |
caatttattcattgaattagaaaatttcattcatttttatacttcgaacaaaatatccctttagaatcacgtaaattgcctagtgacttcgcgttcta-a |
148 |
Q |
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| T |
8401211 |
caatttattcattgaattagaaaatttcactcatttttatacttcgaacaaaatatccctttagaatcacgtaaattgcctagtgacttcgcgttctata |
8401310 |
T |
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| Q |
149 |
aaacagaaaaagtttatcctagatatacgagagaataggtatatgaaaatgtaatttatgttgatagttgaaaagaaaaattttacaaactacaattcgt |
248 |
Q |
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| T |
8401311 |
aaacagaaaaagtttatcctagatatatgagagaataggtatatgaaaatgtaatgtatgttgatagttgaaaagaaaaattttacaaactacaattcgt |
8401410 |
T |
|
| Q |
249 |
gcaacaagtttgttcaaacaattcctcnnnnnnnngtttgttcaaataaatcatacaacaagctggtcttgtcttgtttattagttcctatcttgttcat |
348 |
Q |
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||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8401411 |
gcaacaagtttgttcaaacaattcctc-aaaaaaagtttgttcaaat----------acaagctggtcttgtcttgtttattagttcctatcttgttcaa |
8401499 |
T |
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| Q |
349 |
ggtgagagctctttccaccaagtgtccaagtcagtataat |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
8401500 |
ggtgagagctctttccaccaagtgtccaagtcagtataat |
8401539 |
T |
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