View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0124_low_5 (Length: 354)
Name: NF0124_low_5
Description: NF0124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0124_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 97 - 332
Target Start/End: Original strand, 35552442 - 35552677
Alignment:
| Q |
97 |
tatgtactgacaaaatatactgaacattagatactagtaataacttgagaaaatttaattaattgaacctaaccacgtgtattggtgttcgtaaaccagg |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35552442 |
tatgtactgacaaaatatactgaacattagatactagtaataacttgagaaaatttaattaattgaacctaaccacgtgtattggtgttcgtaaaccagg |
35552541 |
T |
|
| Q |
197 |
ccgccttcgatataaagtattgttgctatataagaatggtcaacatttgacatataccaatgcaatagttgaaatatgagtcagtcctttttgagcaaga |
296 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35552542 |
ccgccttcgatataaagtattgttgctacataagaatggtcaacatttgacatatgccaatgcaatagttgaaatatgagtcagtcctttttgagcaaga |
35552641 |
T |
|
| Q |
297 |
tttataatttattgaatatcttagtttgtgtgtact |
332 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
35552642 |
tttataatttattgaatatcttagtttgtgtgtact |
35552677 |
T |
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