View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0124_low_6 (Length: 296)
Name: NF0124_low_6
Description: NF0124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0124_low_6 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 30 - 296
Target Start/End: Complemental strand, 37859886 - 37859622
Alignment:
| Q |
30 |
tccctctcatggctttagtgtaaaaaatttacgcttatcactcgagatattaaacaagaaaactaggctaattgcttggaaggaagatgcaactaatgct |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
37859886 |
tccctctcatggctttagtgtaaaaaatttacgcttatcactcaagatattaaaaaagaaaactcggctaattgcttggaaggaagatgcaactaatgct |
37859787 |
T |
|
| Q |
130 |
tatgttttcaatttcgatggtcgctctcgctcccaaaccaatccaggtatggcagcatttggtggtttgattaggaattccaacggtgattaccaatgtg |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37859786 |
tatgttttcaatttcgatggtcgctctcgctcccaaaccaatccaggtatggcagc--gtggtggtttgattaggaattccaacggtgattacaaatgtg |
37859689 |
T |
|
| Q |
230 |
gcttccacggtaatattggctattccattagcctccatgccgagatcatggctttgattcaagggat |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37859688 |
gcttccacggtaatattggctattccattagcctccatgccgagatcatggctttgattcaagggat |
37859622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 30 - 296
Target Start/End: Complemental strand, 18102277 - 18102014
Alignment:
| Q |
30 |
tccctctcatggctttagtgtaaaaaatttacgcttatcactcgagatattaaacaagaaaactaggctaattgcttggaaggaagatgcaactaatgct |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
18102277 |
tccctctcatggctttagtgtaaaaaatttacgcttatcactcaagatattaaaaaagaaa-ctcggctaattgcttggaaggaagatgcaactaatgct |
18102179 |
T |
|
| Q |
130 |
tatgttttcaatttcgatggtcgctctcgctcccaaaccaatccaggtatggcagcatttggtggtttgattaggaattccaacggtgattaccaatgtg |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
18102178 |
tatgttttcaatttcgatggtcgctctcgctcccaaaccaatccaggtatggcagcgt--ggtggtttgattaggaattccaacggtgattacaaatgtg |
18102081 |
T |
|
| Q |
230 |
gcttccacggtaatattggctattccattagcctccatgccgagatcatggctttgattcaagggat |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18102080 |
gcttccacggtaatattggctattccattagcctccatgccgagatcatggctttgattcaagggat |
18102014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1602 times since January 2019
Visitors: 1426