View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0124_low_9 (Length: 249)

Name: NF0124_low_9
Description: NF0124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0124_low_9
NF0124_low_9
[»] chr5 (3 HSPs)
chr5 (9-224)||(8401770-8401986)
chr5 (15-99)||(8402025-8402109)
chr5 (59-99)||(8402154-8402194)
[»] chr3 (3 HSPs)
chr3 (55-99)||(11047498-11047542)
chr3 (55-99)||(50196900-50196944)
chr3 (53-100)||(20490915-20490962)
[»] chr1 (2 HSPs)
chr1 (53-100)||(25685731-25685778)
chr1 (53-99)||(10645790-10645836)
[»] chr4 (2 HSPs)
chr4 (38-80)||(53473586-53473628)
chr4 (46-98)||(16413004-16413056)
[»] chr2 (1 HSPs)
chr2 (56-100)||(43829842-43829886)


Alignment Details
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 9 - 224
Target Start/End: Complemental strand, 8401986 - 8401770
Alignment:
Q  9 cagagacgggttaatgattgtgatgtgggcgcttaggttctcatgttgttgagtgtataaatatgcttgaata-ccctcctcctttgagctagatggagg 107  Q
    ||||| |||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||| || ||||||||||||||||||||||||||    
T  8401986 cagagccgggttaatgattgcgatgtgggcgcttaggttctcaggttgtcgagtgtataaatatgcttgagtatccctcctcctttgagctagatggagg 8401887  T
Q  108 taaccgaaaaaatatttaacaatatgatgaatgtaaccnnnnnnngatatttgatggacttgagttgtgtgttatcacacgtcgtctaattaagattgaa 207  Q
    ||||| ||||||||||||||||||||||| ||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8401886 taaccaaaaaaatatttaacaatatgatggatgtaaccaaaaaaagatatttgatggacttgagttgtgtgttatcacacgtcgtctaattaagattgaa 8401787  T
Q  208 cataatcttaatcttaa 224  Q
    |||||||||||| ||||    
T  8401786 cataatcttaattttaa 8401770  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 8402109 - 8402025
Alignment:
Q  15 cgggttaatgattgtgatgtgggcgcttaggttctcatgttgttgagtgtataaatatgcttgaataccctcctcctttgagcta 99  Q
    |||||||||||||| || ||||||||| ||||||||  | ||| |||||||||||||||||||| ||||||||||||||||||||    
T  8402109 cgggttaatgattgcgaagtgggcgctcaggttctcgggctgtcgagtgtataaatatgcttgagtaccctcctcctttgagcta 8402025  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 8402194 - 8402154
Alignment:
Q  59 gagtgtataaatatgcttgaataccctcctcctttgagcta 99  Q
    ||||||||||||||| |||| ||||||||||||||||||||    
T  8402194 gagtgtataaatatgtttgagtaccctcctcctttgagcta 8402154  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 11047498 - 11047542
Alignment:
Q  55 tgttgagtgtataaatatgcttgaataccctcctcctttgagcta 99  Q
    ||||||||||||||||| |||||| ||||||| ||||||||||||    
T  11047498 tgttgagtgtataaatacgcttgagtaccctcatcctttgagcta 11047542  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 50196900 - 50196944
Alignment:
Q  55 tgttgagtgtataaatatgcttgaataccctcctcctttgagcta 99  Q
    ||||||||||||||||||| || ||||||||| ||||||||||||    
T  50196900 tgttgagtgtataaatatgtttaaataccctcatcctttgagcta 50196944  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 20490915 - 20490962
Alignment:
Q  53 gttgttgagtgtataaatatgcttgaataccctcctcctttgagctag 100  Q
    |||||||||||||||||||| ||||| ||||||| || ||||||||||    
T  20490915 gttgttgagtgtataaatatacttgagtaccctcgtcttttgagctag 20490962  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 25685731 - 25685778
Alignment:
Q  53 gttgttgagtgtataaatatgcttgaataccctcctcctttgagctag 100  Q
    ||||||||||||||||||||| |||||||| ||| || ||||||||||    
T  25685731 gttgttgagtgtataaatatgtttgaatactctcatcatttgagctag 25685778  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 10645790 - 10645836
Alignment:
Q  53 gttgttgagtgtataaatatgcttgaataccctcctcctttgagcta 99  Q
    ||||||||||||||||||||| |||| ||||||| ||||| ||||||    
T  10645790 gttgttgagtgtataaatatgtttgagtaccctcatccttagagcta 10645836  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 80
Target Start/End: Complemental strand, 53473628 - 53473586
Alignment:
Q  38 cgcttaggttctcatgttgttgagtgtataaatatgcttgaat 80  Q
    |||||||||| | |||||||||||||||||||||| |||||||    
T  53473628 cgcttaggtttttatgttgttgagtgtataaatatacttgaat 53473586  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 16413056 - 16413004
Alignment:
Q  46 ttctcatgttgttgagtgtataaatatgcttgaataccctcctcctttgagct 98  Q
    |||||| | |||||||||||||||| |||||| ||| |||| |||||||||||    
T  16413056 ttctcaggatgttgagtgtataaatgtgcttggatatcctcatcctttgagct 16413004  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 43829886 - 43829842
Alignment:
Q  56 gttgagtgtataaatatgcttgaataccctcctcctttgagctag 100  Q
    |||||||||| |||||||||||| ||||||| ||| |||||||||    
T  43829886 gttgagtgtagaaatatgcttgagtaccctcatccattgagctag 43829842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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