View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0125_high_1 (Length: 409)
Name: NF0125_high_1
Description: NF0125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0125_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 238 - 395
Target Start/End: Original strand, 34258567 - 34258724
Alignment:
| Q |
238 |
agtagcaggacaaaaataacataaagaggaagaaattacaagatgtagattgatcaacaagaagtgaagacaactttcccttcctcctgagaaaagtttt |
337 |
Q |
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| T |
34258567 |
agtagcaggacaaaaataacataaagaggaagaaattacaagatgtagattgatcaacaagaagtgaagacaactttcccttcctcctgagaaaagtttt |
34258666 |
T |
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| Q |
338 |
gagtttactagattgacatattccggtagctttataccatatggcatccagtgttcct |
395 |
Q |
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| T |
34258667 |
gagtttactagattgacatatcccggtagctttataccatatggcatccagtgttcct |
34258724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 30 - 178
Target Start/End: Original strand, 34258359 - 34258507
Alignment:
| Q |
30 |
agtaccaagaattcaaactacagaatagatacttcatgttgctagaaaagaaatcggtttggacaataacaagcaaagtgattttttattaaaaatatta |
129 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
34258359 |
agtaccaacaattcaaactacagaatagatacttcatgttgctagaaaagaaatcggtttagacaataacaagcaaagtgattttttattaaaaatatta |
34258458 |
T |
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| Q |
130 |
aacaatccggtccaatataacagcaaaaagtgattatacaatatgatgc |
178 |
Q |
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| T |
34258459 |
aacaatccggtccaatataacagcaaaaagtgattatacaatatgatgc |
34258507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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