View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0126_low_1 (Length: 640)
Name: NF0126_low_1
Description: NF0126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0126_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 42 - 552
Target Start/End: Complemental strand, 42408625 - 42408114
Alignment:
| Q |
42 |
tgtaatttgttcgaactaaaatgttgtacatgttaacaatatatagagaatcagagagaatagagaacaaaacaacaaagacaactagggtttcattaga |
141 |
Q |
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|||| ||||| ||||||||||||| ||||||| |||||||| | ||||||||||||||| |||||||||||||||||||||| |||| |||| |||||| |
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| T |
42408625 |
tgtagtttgtacgaactaaaatgtggtacatgctaacaataca--gagaatcagagagaagagagaacaaaacaacaaagacagctagagttttattaga |
42408528 |
T |
|
| Q |
142 |
atggcaaaagttcaaaacacaaatgttactcaggatatatagtaaa--tacagagagactaaactactcttagctcaattataacaaaaggttcaataac |
239 |
Q |
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| T |
42408527 |
tcgacaaaagttcaaaatacaa-------taagaatataaagtaaaaatataaagagactaaactacccttagctcaattataacaaaaggttcaataac |
42408435 |
T |
|
| Q |
240 |
ctattatctaatggtacatgattaaatacaaaaaatgca--------gtaactaaacatatttaattaactcaatttttaacttcnnnnnnncttattgt |
331 |
Q |
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|||||||| |||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42408434 |
ctattatcaaatggtacatgattaaatacaagaaatgtaaatttttagtaactaaacatatttaattaactcaatttttaacttctttttttcttattgt |
42408335 |
T |
|
| Q |
332 |
gcttcagaaggattccatgcagtttggagagatggaatggttcacagaggagggtctttttggtgatgacttcactcaagaagccatggctgcagctgaa |
431 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42408334 |
gcttcagaaggattccatgcagtttggagagatggaatggttcacagaggagggtctttttggtgatgacttcactcaagaagccatggctgcagctgaa |
42408235 |
T |
|
| Q |
432 |
gttcctcagcttccagtaactcatgcaagcaacaattattcatcatacagaaactccaagtcacatatgtctaacaaaaagcctagaattgaactgatac |
531 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42408234 |
gttcctcagcttccagtaactcatgcaagcaacaattattcatcatacagaaactccaagtcacatatgtctaacaaaaagcctagaattgaactcatac |
42408135 |
T |
|
| Q |
532 |
gtgattatgattatgatgatg |
552 |
Q |
| |
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||||||||||||||||||||| |
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| T |
42408134 |
gtgattatgattatgatgatg |
42408114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 5265131 - 5265167
Alignment:
| Q |
205 |
actcttagctcaattataacaaaaggttcaataacct |
241 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||| |
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| T |
5265131 |
actcttagctcaattataacaaaaggctcaataacct |
5265167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 113
Target Start/End: Original strand, 34413217 - 34413248
Alignment:
| Q |
82 |
atatagagaatcagagagaatagagaacaaaa |
113 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
34413217 |
atatagagaatcagagagaatagagaacaaaa |
34413248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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