View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0126_low_10 (Length: 283)
Name: NF0126_low_10
Description: NF0126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0126_low_10 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 35 - 277
Target Start/End: Original strand, 23697383 - 23697625
Alignment:
| Q |
35 |
tatataggagcatttaaccaactgatgttggtgtgtgtaccttagattaatagcattggtctcatgtttttggtcacacaacagtggtaaagtatcaccc |
134 |
Q |
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| T |
23697383 |
tatatgggagcatttaaccaactaatgttggtgtatgtaccttagattaatagcattggtctcatgtttttggtcacgcaacagtggtaaagtatcaccc |
23697482 |
T |
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| Q |
135 |
tttgcagccctgttgcatttggtcaatgctttgtagtacctctcattcttggatggcttgacttgattgattttaagaacagtcacacacacagttgtct |
234 |
Q |
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| T |
23697483 |
tttgcagccctgttgcatttggtgcatgctttgtagtaccacccattcttggatggtttgacttgattgattttaagaacaatcacacacacagttgtct |
23697582 |
T |
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| Q |
235 |
atggaaaatatataaaagcaaaaccatgtcaacttcatctcac |
277 |
Q |
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| T |
23697583 |
atggaagatatataaaagcaaaaccatgtcaacttcatatcac |
23697625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 73 - 245
Target Start/End: Original strand, 22078417 - 22078589
Alignment:
| Q |
73 |
accttagattaatagcattggtctcatgtttttggtcacacaacagtggtaaagtatcaccctttgcagccctgttgcatttggtcaatgctttgtagta |
172 |
Q |
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|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||| ||||||||||||| |
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| T |
22078417 |
accttagattgatagcattggtctcgtgtttttggtcacacaacagtggtaaagtatcaccctttgcaactctgttgcacttggtgcatgctttgtagta |
22078516 |
T |
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| Q |
173 |
cctctcattcttggatggcttgacttgattgattttaagaacagtcacacacacagttgtctatggaaaatat |
245 |
Q |
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| T |
22078517 |
ccacccattcttggatggtttcacttgattgatcttcacaacagtcacacacacagttgtctatggaatatat |
22078589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 78 - 202
Target Start/End: Original strand, 123620 - 123745
Alignment:
| Q |
78 |
agattaatagcattggtctcatgtttttggtcacacaacagtggtaaagtatcaccctttgcagccc-tgttgcatttggtcaatgctttgtagtacctc |
176 |
Q |
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| T |
123620 |
agattgatagcattggtctcatggttttcagaacagaatagcggtaaggtatcaccctttgcagcccctgttgcacttagtgcacgctttgtagtaccac |
123719 |
T |
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| Q |
177 |
tcattcttggatggcttgacttgatt |
202 |
Q |
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| T |
123720 |
ccattcttggatggtttgacttgatt |
123745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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