View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0126_low_3 (Length: 415)
Name: NF0126_low_3
Description: NF0126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0126_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 15 - 387
Target Start/End: Original strand, 35875641 - 35876016
Alignment:
| Q |
15 |
tgagatgaatgcaaagagaaaatcacaaacgcaacatcgtttgagtctcaacaagtttgctgatatgaatcctgaggagtttagtaaaacctacttacca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35875641 |
tgagatgaatgcaaagagaaaatcacaaacgcaacatcgtttgagtctcaacaagtttgctgatatgagtcctgaggagtttagtaaaacctacttacca |
35875740 |
T |
|
| Q |
115 |
aagatagagatgcagataccgtccaa---ggacaacgcaaagcttaaagatgatgatgattgtgaaaaccttcccacttctgtagattggagggaaaaag |
211 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35875741 |
aagatagagatgcaggtaccgtccaatcgggacaacgcaaagcttaaagatgatgatgattgtgaaaaccttcccacttctgtagattggagggaaaaag |
35875840 |
T |
|
| Q |
212 |
gagctgtgactgaagttagggaccaaggagattgtcgtaagattttattaattatatcattctttattactaattttcatttttgcatttcatctcatct |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35875841 |
gagctgtgactgaagttagggaccaaggagattgtcgtaagattttattaattatatcattctttattactaattttcatttttgcatttcatctcatct |
35875940 |
T |
|
| Q |
312 |
atgtttatgaatttaataattttatacccttagacagtataggaatatagattttgaagttattttagatgttatt |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35875941 |
atgtttatgaatttaataattttatacccttagacagtataggaatatagattttgaagttattttagatgttatt |
35876016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 15 - 387
Target Start/End: Original strand, 24449842 - 24450217
Alignment:
| Q |
15 |
tgagatgaatgcaaagagaaaatcacaaacgcaacatcgtttgagtctcaacaagtttgctgatatgaatcctgaggagtttagtaaaacctacttacca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24449842 |
tgagatgaatgcaaagagaaaatcacaaacgcaacatcgtttgagtctcaacaagtttgctgatatgagtcctgaggagtttagtaaaacctacttacca |
24449941 |
T |
|
| Q |
115 |
aagatagagatgcagataccgtccaa---ggacaacgcaaagcttaaagatgatgatgattgtgaaaaccttcccacttctgtagattggagggaaaaag |
211 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24449942 |
aagatagagatgcaggtaccgtccaatcgggacaacgcaaagcttaaagatgatgatgattgtgaaaaccttcccacttctgtagattggagggaaaaag |
24450041 |
T |
|
| Q |
212 |
gagctgtgactgaagttagggaccaaggagattgtcgtaagattttattaattatatcattctttattactaattttcatttttgcatttcatctcatct |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24450042 |
gagctgtgactgaagttagggaccaaggagattgtcgtaagattttattaattatatcattctttattactaattttcatttttgcatttcatctcatct |
24450141 |
T |
|
| Q |
312 |
atgtttatgaatttaataattttatacccttagacagtataggaatatagattttgaagttattttagatgttatt |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24450142 |
atgtttatgaatttaataattttatacccttagacagtataggaatatagattttgaagttattttagatgttatt |
24450217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1651 times since January 2019
Visitors: 1426