View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0126_low_4 (Length: 391)
Name: NF0126_low_4
Description: NF0126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0126_low_4 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 352; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 7 - 370
Target Start/End: Complemental strand, 3572652 - 3572289
Alignment:
| Q |
7 |
tgaatgacctccagttcacggtttttagagaaggtctccggatcagcagaaagtccagcagtgtcccatccatagtcaccgggaaattcaccagtaaggt |
106 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3572652 |
tgaatgacctctagttcacggtttttagagaaggtctccggatcagcagaaagtccagcagtgtcccatccatagtcaccgggaaattcaccagtaaggt |
3572553 |
T |
|
| Q |
107 |
aagatggagcttcaccagagaatggacccaagtacttgacacggtctggaccgtaccacgggcttcgagaaggaacattcttcttggtggttgttttcct |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3572552 |
aagatggagcttcaccagagaatggacccaagtacttgacacggtctggaccgtaccatgggcttccagaaggaacattcttcttggtggttgttttcct |
3572453 |
T |
|
| Q |
207 |
catggtaattcttcccatgacaaggtctggagtagagggggaaagcttgattgccttcccaaccaatgatgaagaagagagagacattgttgaagcagcc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3572452 |
catggtaattcttcccatgacaaggtctggagtagagggggaaagcttgattgccttcccaaccaatgatgaagaagagagagacattgttgaagcagcc |
3572353 |
T |
|
| Q |
307 |
atggtagaattttagtgtttactaagtaaacaaataaatatctttattggcaatgttgatgatg |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3572352 |
atggtagaattttagtgtttactaagtaaacaaataaatatctttattggcaatgttgatgatg |
3572289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 6 - 319
Target Start/End: Original strand, 3585281 - 3585594
Alignment:
| Q |
6 |
atgaatgacctccagttcacggtttttagagaaggtctccggatcagcagaaagtccagcagtgtcccatccatagtcaccgggaaattcaccagtaagg |
105 |
Q |
| |
|
|||||||||||| |||||||||||||| | || ||||| || || |||||||| |||||||| ||||| ||||| ||||| |||||||| || || ||| |
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|
| T |
3585281 |
atgaatgacctcgagttcacggtttttggcaaatgtctctgggtcggcagaaagcccagcagtatcccaaccataatcaccaggaaattctcccgtgagg |
3585380 |
T |
|
| Q |
106 |
taagatggagcttcaccagagaatggacccaagtacttgacacggtctggaccgtaccacgggcttcgagaaggaacattcttcttggtggttgttttcc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| || ||||||||||||||||||||| |
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|
| T |
3585381 |
taagatggagcttcaccagagaatggacccaagtacttgacacggtctggaccgtaccactggcttccagaaggagcagtcttcttggtggttgttttcc |
3585480 |
T |
|
| Q |
206 |
tcatggtaattcttcccatgacaaggtctggagtagagggggaaagcttgattgccttcccaaccaatgatgaagaagagagagacattgttgaagcagc |
305 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||| || |||||||||||||||||||| ||||||| ||||||||| ||||||| ||||||||||||||| |
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|
| T |
3585481 |
tcatggtgattcttcccatcacaaggtctggagtcgaaggggaaagcttgattgcctttccaaccattgatgaagatgagagagccattgttgaagcagc |
3585580 |
T |
|
| Q |
306 |
catggtagaatttt |
319 |
Q |
| |
|
||| |||| ||||| |
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|
| T |
3585581 |
cattgtagtatttt |
3585594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 10 - 308
Target Start/End: Complemental strand, 3575933 - 3575635
Alignment:
| Q |
10 |
atgacctccagttcacggtttttagagaaggtctccggatcagcagaaagtccagcagtgtcccatccatagtcaccgggaaattcaccagtaaggtaag |
109 |
Q |
| |
|
|||||||| ||||||||||| || | || ||||| || ||||||||||| |||||||||||||| ||||||||||| |||||||||||||| || |||| |
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|
| T |
3575933 |
atgacctcgagttcacggttcttggcaaatgtctctgggtcagcagaaagcccagcagtgtcccaaccatagtcaccaggaaattcaccagtgagataag |
3575834 |
T |
|
| Q |
110 |
atggagcttcaccagagaatggacccaagtacttgacacggtctggaccgtaccacgggcttcgagaaggaacattcttcttggtggttgttttcctcat |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| || ||||||||| |||||||||||||||| |
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|
| T |
3575833 |
atggagcttcaccagagaatggacccaagtatttgacacgatctggaccgtaccacgggcttccagaagggacgttcttcttgttggttgttttcctcat |
3575734 |
T |
|
| Q |
210 |
ggtaattcttcccatgacaaggtctggagtagagggggaaagcttgattgccttcccaaccaatgatgaagaagagagagacattgttgaagcagccat |
308 |
Q |
| |
|
||| ||||||||||| |||||||||||||| || |||||||||||||||||||||||||||| || |||||||||||||| ||||||||| | |||||| |
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|
| T |
3575733 |
ggtgattcttcccatcacaaggtctggagtggaaggggaaagcttgattgccttcccaaccattgttgaagaagagagagccattgttgatgtagccat |
3575635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 10 - 341
Target Start/End: Complemental strand, 3563954 - 3563623
Alignment:
| Q |
10 |
atgacctccagttcacggtttttagagaaggtctccggatcagcagaaagtccagcagtgtcccatccatagtcaccgggaaattcaccagtaaggtaag |
109 |
Q |
| |
|
|||||||| |||||||||||||| | || ||||| || |||||||||||||||||||||||||| || |||||||| ||||||||||| || ||||| | |
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|
| T |
3563954 |
atgacctcgagttcacggtttttggcaaatgtctctgggtcagcagaaagtccagcagtgtcccaaccgtagtcaccaggaaattcaccggtgaggtagg |
3563855 |
T |
|
| Q |
110 |
atggagcttcaccagagaatggacccaagtacttgacacggtctggaccgtaccacgggcttcgagaaggaacattcttcttggtggttgttttcctcat |
209 |
Q |
| |
|
|||| |||||||| |||||||| |||||||||||||||||||||||||||||||| || |||| |||||||||| |||||||||||||| ||||||||| |
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|
| T |
3563854 |
atggggcttcaccggagaatgggcccaagtacttgacacggtctggaccgtaccaaggacttccagaaggaacagacttcttggtggttgctttcctcat |
3563755 |
T |
|
| Q |
210 |
ggtaattcttcccatgacaaggtctggagtagagggggaaagcttgattgccttcccaaccaatgatgaagaagagagagacattgttgaagcagccatg |
309 |
Q |
| |
|
|| | |||||||| ||| |||| | || || ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||| |
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|
| T |
3563754 |
tgtgactcttcccaccccaatgtcttgggtggatggggaaagcttgattgccttccctacaaatgatgaagaagagagagacattgttgaagccgccatt |
3563655 |
T |
|
| Q |
310 |
gtagaattttagtgtttactaagtaaacaaat |
341 |
Q |
| |
|
||| |||||| | ||||||||||||||||| |
|
|
| T |
3563654 |
ttagtattttattccttactaagtaaacaaat |
3563623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 10 - 336
Target Start/End: Complemental strand, 3569602 - 3569276
Alignment:
| Q |
10 |
atgacctccagttcacggtttttagagaaggtctccggatcagcagaaagtccagcagtgtcccatccatagtcaccgggaaattcaccagtaaggtaag |
109 |
Q |
| |
|
|||||||| ||||||||||| || | || ||||| || |||||||||||||||||||||||||| || |||||||| || |||||||| || ||||| | |
|
|
| T |
3569602 |
atgacctcgagttcacggttcttggcaaatgtctctgggtcagcagaaagtccagcagtgtcccaaccgtagtcaccagggaattcacctgtgaggtagg |
3569503 |
T |
|
| Q |
110 |
atggagcttcaccagagaatggacccaagtacttgacacggtctggaccgtaccacgggcttcgagaaggaacattcttcttggtggttgttttcctcat |
209 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||| |||||||||||||||||||| ||||||| ||| ||||| |||||||||||||||||||||||| |
|
|
| T |
3569502 |
atggggcttcaccggagaatgggcccaagtacttcacacggtctggaccgtaccatgggcttccagacggaacggacttcttggtggttgttttcctcat |
3569403 |
T |
|
| Q |
210 |
ggtaattcttcccatgacaaggtctggagtagagggggaaagcttgattgccttcccaaccaatgatgaagaagagagagacattgttgaagcagccatg |
309 |
Q |
| |
|
|| | |||||||| ||| |||| |||| || |||||||| |||||||||||||| || ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3569402 |
tgtgactcttcccaccccaatgtcttgagtggatggggaaagtttgattgccttcccgacaaatgatgaagaagagagggacattgttgaagcagccatt |
3569303 |
T |
|
| Q |
310 |
gtagaattttagtgtttactaagtaaa |
336 |
Q |
| |
|
|| | ||||| || |||||||||||| |
|
|
| T |
3569302 |
gtggtatttttttgcttactaagtaaa |
3569276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 13 - 315
Target Start/End: Complemental strand, 13275879 - 13275581
Alignment:
| Q |
13 |
acctccagttcacggtttttagagaaggtctccggatcagcagaaagtccagcagtgtcccatccatagtcaccgggaaattcaccagtaaggtaagatg |
112 |
Q |
| |
|
||||| |||||||||||||| | || ||||| ||||||||||||||||||||||| | ||| ||||| ||||| || ||||||||||| | |||||||| |
|
|
| T |
13275879 |
acctcaagttcacggttttttgcaaatgtctctggatcagcagaaagtccagcagtattccaaccataatcaccagggaattcaccagtcaagtaagatg |
13275780 |
T |
|
| Q |
113 |
gagcttcaccagagaatggacccaagtacttgacacggtctggaccgtaccacgggcttcgagaaggaacattcttcttggtggttgttttcctcatggt |
212 |
Q |
| |
|
| || |||||| ||||||| |||| ||||||||||||||||||||| ||||| || |||| |||| ||| ||||| ||||||||||| ||||||| |
|
|
| T |
13275779 |
gggcctcaccaaagaatgggcccaggtacttgacacggtctggaccataccatggacttcctgaagaaac---tttctttgtggttgtttt-ttcatggt |
13275684 |
T |
|
| Q |
213 |
aattcttcccatgacaaggtctggagtagagggggaaagcttgattgccttcccaaccaatgatgaagaagagagagacattgttgaagcagccatggta |
312 |
Q |
| |
|
| ||||| || |||||||| | ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
13275683 |
gacccttccaataccaaggtcttgggtagaggggttaagtttgattgcctttccaaccaatgatgaagaagagagagacattgttgaggcagccattgta |
13275584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 10 - 172
Target Start/End: Complemental strand, 38356969 - 38356807
Alignment:
| Q |
10 |
atgacctccagttcacggtttttagagaaggtctccggatcagcagaaagtccagcagtgtcccatccatagtcaccgggaaattcaccagtaaggtaag |
109 |
Q |
| |
|
||||| || ||||||||||| || | ||| ||||| || ||||||||||||||||||||||||||||| |||||||| || || || ||||| | ||||| |
|
|
| T |
38356969 |
atgacttcaagttcacggttcttggcgaatgtctctgggtcagcagaaagtccagcagtgtcccatccgtagtcacctgggaactctccagtcaagtaag |
38356870 |
T |
|
| Q |
110 |
atggagcttcaccagagaatggacccaagtacttgacacggtctggaccgtaccacgggcttc |
172 |
Q |
| |
|
| || | |||||||||||||| || |||||||| ||||||||||| |||||||| ||||||| |
|
|
| T |
38356869 |
acgggggctcaccagagaatgggcctaagtacttaacacggtctgggccgtaccatgggcttc |
38356807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 60 - 155
Target Start/End: Complemental strand, 42602716 - 42602621
Alignment:
| Q |
60 |
tccagcagtgtcccatccatagtcaccgggaaattcaccagtaaggtaagatggagcttcaccagagaatggacccaagtacttgacacggtctgg |
155 |
Q |
| |
|
|||||| |||||||||||||| ||||| |||||||||||||| | ||| |||||| || ||||||||||||||||||||||| ||||||||| |
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|
| T |
42602716 |
tccagctgtgtcccatccataatcaccaggaaattcaccagtcaagtatgatggaatttgttcagagaatggacccaagtacttgggacggtctgg |
42602621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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