View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0127_low_1 (Length: 551)
Name: NF0127_low_1
Description: NF0127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0127_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 102 - 316
Target Start/End: Complemental strand, 1624379 - 1624165
Alignment:
| Q |
102 |
tacaagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattg |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1624379 |
tacaagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattg |
1624280 |
T |
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| Q |
202 |
aggttgctgttcataatgacaatattatgctggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggaggttttaccactta |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1624279 |
aggttgctgttcataatgacaatattatgctggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggtggttttaccactta |
1624180 |
T |
|
| Q |
302 |
tagctctgcaacagc |
316 |
Q |
| |
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||||||||||||||| |
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| T |
1624179 |
tagctctgcaacagc |
1624165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 102 - 326
Target Start/End: Complemental strand, 1630354 - 1630130
Alignment:
| Q |
102 |
tacaagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattg |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1630354 |
tacaagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattg |
1630255 |
T |
|
| Q |
202 |
aggttgctgttcataatgacaatattatgctggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggaggttttaccactta |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
1630254 |
aggttgctgttcataatgacaatattatgctggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccactta |
1630155 |
T |
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| Q |
302 |
tagctctgcaacagctggttagtta |
326 |
Q |
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||||||||||||||| ||| ||||| |
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| T |
1630154 |
tagctctgcaacagcaggtgagtta |
1630130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 102 - 316
Target Start/End: Complemental strand, 1607358 - 1607144
Alignment:
| Q |
102 |
tacaagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattg |
201 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1607358 |
tacaagactgtgcaggctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattg |
1607259 |
T |
|
| Q |
202 |
aggttgctgttcataatgacaatattatgctggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggaggttttaccactta |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1607258 |
aggttgctgttcataatgacaatattatgctggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggtggttttaccactta |
1607159 |
T |
|
| Q |
302 |
tagctctgcaacagc |
316 |
Q |
| |
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||||||||||||||| |
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| T |
1607158 |
tagctctgcaacagc |
1607144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 102 - 326
Target Start/End: Original strand, 10819925 - 10820149
Alignment:
| Q |
102 |
tacaagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattg |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||| ||||||||||| |
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| T |
10819925 |
tacaagactgtgcaagctgctttaaatgctgctgctaagagaaaatacaagacaaggtatgtgatacatgtgaagaaaggtgtttataaagagaacattg |
10820024 |
T |
|
| Q |
202 |
aggttgctgttcataatgacaatattatgctggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggaggttttaccactta |
301 |
Q |
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||||||||||||||||||| || |||||| |||| |||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
10820025 |
aggttgctgttcataatgataacattatgttggtcggtgatggaatgcaaaataccatcataacaagttctagaagtgttcaaggtggttttaccactta |
10820124 |
T |
|
| Q |
302 |
tagctctgcaacagctggttagtta |
326 |
Q |
| |
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||||||||||||||| ||| ||||| |
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| T |
10820125 |
tagctctgcaacagccggtgagtta |
10820149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 443 - 540
Target Start/End: Original strand, 10820656 - 10820754
Alignment:
| Q |
443 |
aaattatacttgtgactttcttacatacaattaatttcat-tttttaaataattacgcttggatcatttaaatttaggtattgatggacttcacttcat |
540 |
Q |
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|||||||| ||||| ||||||||| |||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
10820656 |
aaattataattgtggctttcttacctacaattactttcatatttttaaataattactcttggatcatttaaatttaggtattgatggacttcacttcat |
10820754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 443 - 540
Target Start/End: Complemental strand, 1630050 - 1629944
Alignment:
| Q |
443 |
aaattatacttgtgactttcttacat----acaattaatttcatttttta-----aataattacgcttggatcatttaaatttaggtattgatggacttc |
533 |
Q |
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|||||||||||| | ||||||||||| ||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1630050 |
aaattatacttgaggctttcttacatgcatacaattactttcattttttattttaaataattactcttggatcatttaaatttaggtattgatggacttc |
1629951 |
T |
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| Q |
534 |
acttcat |
540 |
Q |
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||||||| |
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| T |
1629950 |
acttcat |
1629944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 499 - 540
Target Start/End: Complemental strand, 1606687 - 1606646
Alignment:
| Q |
499 |
cttggatcatttaaatttaggtattgatggacttcacttcat |
540 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
1606687 |
cttggatcatttaaatttaggtattgatggacttcacttcat |
1606646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 102 - 316
Target Start/End: Complemental strand, 18785405 - 18785191
Alignment:
| Q |
102 |
tacaagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattg |
201 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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|
| T |
18785405 |
tacaagactgtgcaagctgctctaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgtgaagaaaggtgtttataaagagaacattg |
18785306 |
T |
|
| Q |
202 |
aggttgctgttcataatgacaatattatgctggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggaggttttaccactta |
301 |
Q |
| |
|
||||||| ||||| ||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
18785305 |
aggttgcggttcacaatgataacattatgttggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggtggttttaccactta |
18785206 |
T |
|
| Q |
302 |
tagctctgcaacagc |
316 |
Q |
| |
|
||||||||||||||| |
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|
| T |
18785205 |
tagctctgcaacagc |
18785191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 114 - 207
Target Start/End: Complemental strand, 12803590 - 12803497
Alignment:
| Q |
114 |
caagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttg |
207 |
Q |
| |
|
|||| |||| |||||||||||| | ||||| | ||| ||||| ||||| |||| ||| ||||||||||||||||||||||| |||| ||||| |
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| T |
12803590 |
caagatgctataaatgctgctgggaggagaaggtttaaaacaagatttgttatacgtgtgaagaaaggtgtttatagagagaatattgtggttg |
12803497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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