View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0127_low_2 (Length: 357)
Name: NF0127_low_2
Description: NF0127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0127_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 29 - 349
Target Start/End: Original strand, 41446727 - 41447046
Alignment:
| Q |
29 |
acaaataaggcttcaaagaattgaatctatcaagagaagtacacgagttgcaagaaattcttcaaggtaatcttcaacttgaagattcttctgaataact |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41446727 |
acaaataaggcttcaaagaattgaatctatcaagagaagtacacgagttgcaagaaattcttcaaggtaatcttcaacttgaagattcttctgaataact |
41446826 |
T |
|
| Q |
129 |
attggagtgttattattatgannnnnnnnnnnncaaaatttaaatgggatgtaattaaaatggatgttttctttccatggtattaagtaaggttgtaatt |
228 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41446827 |
attggagtgttattattatgatattatttttttcaaaatttaaatgggatgtaattaaaatggatgttttctttccatggtattaagtaaggttgtaatt |
41446926 |
T |
|
| Q |
229 |
actaattggattatgtcttaattctctctagtaagatccaagttaaggattctgctgtcctatttcctatgatgtttttgagatgagttaggggataggg |
328 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41446927 |
actaattggattatgtcctaattctctctagtaagat-caagttaaggattctgctgtcctatttcttatgatgtttttgagatgagttaggggataggg |
41447025 |
T |
|
| Q |
329 |
caacttgtgtttgttcatctc |
349 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
41447026 |
caacttgtgtttgttcatctc |
41447046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1628 times since January 2019
Visitors: 1426