View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0127_low_3 (Length: 283)

Name: NF0127_low_3
Description: NF0127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0127_low_3
NF0127_low_3
[»] scaffold0048 (1 HSPs)
scaffold0048 (41-232)||(76158-76349)
[»] chr8 (1 HSPs)
chr8 (67-197)||(22562044-22562174)
[»] scaffold0512 (1 HSPs)
scaffold0512 (44-153)||(8088-8197)
[»] chr5 (3 HSPs)
chr5 (44-128)||(10190111-10190195)
chr5 (43-153)||(25582526-25582636)
chr5 (94-171)||(17458702-17458779)
[»] chr2 (1 HSPs)
chr2 (44-140)||(22499288-22499384)
[»] chr6 (1 HSPs)
chr6 (44-167)||(31138685-31138808)
[»] chr7 (2 HSPs)
chr7 (58-193)||(12348019-12348154)
chr7 (44-132)||(11801417-11801505)
[»] chr1 (3 HSPs)
chr1 (43-153)||(20947678-20947788)
chr1 (44-127)||(21499781-21499863)
chr1 (51-104)||(21494657-21494710)
[»] scaffold1405 (1 HSPs)
scaffold1405 (44-153)||(629-738)
[»] chr3 (1 HSPs)
chr3 (44-153)||(22924662-22924771)
[»] scaffold0524 (1 HSPs)
scaffold0524 (67-103)||(4062-4098)


Alignment Details
Target: scaffold0048 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 41 - 232
Target Start/End: Original strand, 76158 - 76349
Alignment:
Q  41 agataattggaaataggaaggcgtaggttaaagtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaaatgaatagtgtgt 140  Q
    ||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  76158 agataattgaaaatagaaaggcgtaagttaaagtaagggataacgttagaaataatgataatggtgaggtaaggaccttaagttaaaatgaatagtgtgt 76257  T
Q  141 ggtcgatttaagatgatggatgatgttgagaaaactaataagacgaattagaacggggtaagaaagttctatgttgagtaatggatgatgtc 232  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  76258 ggtcgatttaagatgatggatgatgttgagaaaactgataagacgaattagaacggggaaagaaagttctatgttgagtaatgaatgatgtc 76349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 197
Target Start/End: Complemental strand, 22562174 - 22562044
Alignment:
Q  67 gttaaagtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaaatgaatagtgtgtggtcgatttaagatgatggatgatgt 166  Q
    ||||||||||||||||| ||||||||||||| ||||||||| |||| ||| |||||| |||||||| |  ||||||||||||||||| ||| ||| ||||    
T  22562174 gttaaagtaagggataatgttagaaataatgttaatggtgaagtaacgaccttaagtgaaaatgaacaaagtgtggtcgatttaagaggatagataatgt 22562075  T
Q  167 tgagaaaactaataagacgaattagaacggg 197  Q
    | ||| || | |||| | ||| |||||||||    
T  22562074 taagagaattgataaaatgaaatagaacggg 22562044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0512 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 153
Target Start/End: Complemental strand, 8197 - 8088
Alignment:
Q  44 taattggaaataggaaggcgtaggttaaagtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaaatgaatagtgtgtggt 143  Q
    ||||||||||||  |||||||| |||||||||||||||   |||||||| |||||||||||||| |||| ||| ||| |||||||||||  | |||||||    
T  8197 taattggaaatataaaggcgtaagttaaagtaagggatggtgttagaaagaatgataatggtgaagtaacgaccttaggttaaaatgaaatgggtgtggt 8098  T
Q  144 cgatttaaga 153  Q
     |||||||||    
T  8097 agatttaaga 8088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 10190195 - 10190111
Alignment:
Q  44 taattggaaataggaaggcgtaggttaaagtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaaa 128  Q
    ||||||||| |||||||| ||| ||||| |||| |||||  |||||||||||||||||||||||||||| ||| |||||||||||    
T  10190195 taattggaagtaggaaggtgtaagttaacgtaaaggatattgttagaaataatgataatggtgaggtaaagactttaagttaaaa 10190111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 153
Target Start/End: Original strand, 25582526 - 25582636
Alignment:
Q  43 ataattggaaataggaaggcgtaggttaaagtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaaatgaatagtgtgtgg 142  Q
    ||||||| |||||  |||||||| ||||||||||||||||| |||||||| | |||||||| ||| ||||  |  ||| |||||||||||  | ||| ||    
T  25582526 ataattgaaaatataaaggcgtaagttaaagtaagggataatgttagaaacattgataatgatgaagtaacaaacttatgttaaaatgaaatgagtgagg 25582625  T
Q  143 tcgatttaaga 153  Q
    || ||||||||    
T  25582626 tcaatttaaga 25582636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 171
Target Start/End: Complemental strand, 17458779 - 17458702
Alignment:
Q  94 aatgataatggtgaggtaaggacattaagttaaaatgaatagtgtgtggtcgatttaagatgatggatgatgttgaga 171  Q
    ||||||| |||||| |||| ||| ||| |||||||||||  | ||||||||||||||||| ||| |||||| ||||||    
T  17458779 aatgatattggtgaagtaaagaccttaggttaaaatgaaacgagtgtggtcgatttaagaggatagatgatattgaga 17458702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 140
Target Start/End: Original strand, 22499288 - 22499384
Alignment:
Q  44 taattggaaataggaaggcgtaggttaaagtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaaatgaatagtgtgt 140  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||||||||||| ||||||||||  ||| ||  ||||||||| |||||||| ||||    
T  22499288 taattggaaatagaaaggtgtaagttaaagtaagggataatgttagaaataataataatggtgaaataacgatcttaagttaagatgaatagagtgt 22499384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 167
Target Start/End: Original strand, 31138685 - 31138808
Alignment:
Q  44 taattggaaataggaaggcgtaggttaaagtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaaatgaatagtgtgtggt 143  Q
    ||||| ||||||  |||| ||| ||||||||||||||||   |||||||||||||||||||||| |||| ||  |||||||||||| ||||| ||||| |    
T  31138685 taatttgaaatataaaggtgtaagttaaagtaagggatactattagaaataatgataatggtgaagtaacgaacttaagttaaaataaatagagtgtgct 31138784  T
Q  144 cgatttaagatgatggatgatgtt 167  Q
    ||| |||||| |||  ||||||||    
T  31138785 cgaattaagaggataaatgatgtt 31138808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 193
Target Start/End: Original strand, 12348019 - 12348154
Alignment:
Q  58 aaggcgtaggttaaagtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaaatgaatagtgtgtggtcgatttaagatgat 157  Q
    ||||| || |||||||||||||| |  |||||||||||| ||| |||||| || | ||| |||||||||||||||||| ||| |  | |||||||| |||    
T  12348019 aaggcataagttaaagtaagggacatggttagaaataataatattggtgaagtgacgaccttaagttaaaatgaatagagtgagaccaatttaagaggat 12348118  T
Q  158 ggatgatgttgagaaaactaataagacgaattagaa 193  Q
     ||||||||| ||| || | |||||||||| |||||    
T  12348119 agatgatgttaagagaattgataagacgaaatagaa 12348154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 132
Target Start/End: Original strand, 11801417 - 11801505
Alignment:
Q  44 taattggaaataggaaggcgtaggttaaagtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaaatgaa 132  Q
    |||||| |||||  |||||||| |||||| |||||||| | |||||||| |  ||||||||||| |||| ||  ||| |||||||||||    
T  11801417 taattgaaaatataaaggcgtaagttaaaataagggatgatgttagaaagatggataatggtgaagtaacgaacttaggttaaaatgaa 11801505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 153
Target Start/End: Complemental strand, 20947788 - 20947678
Alignment:
Q  43 ataattggaaataggaaggcgtaggttaaagtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaaatgaatagtgtgtgg 142  Q
    |||||||||||||  |||||||| ||||||||||| ||||| |||||||| | ||||||||||||  ||| ||  ||| |||||||||||  | ||||||    
T  20947788 ataattggaaatataaaggcgtaagttaaagtaagagataatgttagaaacattgataatggtgaaataacgaacttaggttaaaatgaaatgagtgtgg 20947689  T
Q  143 tcgatttaaga 153  Q
    || ||||||||    
T  20947688 tcaatttaaga 20947678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 21499781 - 21499863
Alignment:
Q  44 taattggaaataggaaggcgtaggttaaagtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaa 127  Q
    |||||| ||||||||||| ||| |||||||| |||  ||| | |||| ||||||||||||||||||||| ||| ||| ||||||    
T  21499781 taattgaaaataggaaggtgtaagttaaagtgaggt-taatgctagagataatgataatggtgaggtaaagactttaggttaaa 21499863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 21494710 - 21494657
Alignment:
Q  51 aaataggaaggcgtaggttaaagtaagggataacgttagaaataatgataatgg 104  Q
    |||||| ||||| || ||||||||||||||| | |||||||| |||||||||||    
T  21494710 aaatagaaaggcataagttaaagtaagggatgatgttagaaaaaatgataatgg 21494657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1405 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold1405
Description:

Target: scaffold1405; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 44 - 153
Target Start/End: Complemental strand, 738 - 629
Alignment:
Q  44 taattggaaataggaaggcgtaggttaaagtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaaatgaatagtgtgtggt 143  Q
    |||||| |||||  |||||||| ||||||||||||||||| |||||||| | |||||||||||| ||||  |  ||| |||||||||||  | |||||||    
T  738 taattgcaaatataaaggcgtaagttaaagtaagggataatgttagaaacattgataatggtgaagtaaaaaacttaggttaaaatgaaatgagtgtggt 639  T
Q  144 cgatttaaga 153  Q
    | ||||||||    
T  638 caatttaaga 629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 153
Target Start/End: Complemental strand, 22924771 - 22924662
Alignment:
Q  44 taattggaaataggaaggcgtaggttaaagtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaaatgaatagtgtgtggt 143  Q
    |||| |||||||  |||||||| ||||| ||| ||||||| ||||| |  ||||||| |||||| | || ||| ||| ||| |||||||  | |||||||    
T  22924771 taatcggaaatataaaggcgtaagttaacgtaggggataatgttagtatgaatgatattggtgaagcaacgaccttatgtttaaatgaaatgagtgtggt 22924672  T
Q  144 cgatttaaga 153  Q
    ||||||||||    
T  22924671 cgatttaaga 22924662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 4062 - 4098
Alignment:
Q  67 gttaaagtaagggataacgttagaaataatgataatg 103  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  4062 gttaaagtaagggataatgttagaaataataataatg 4098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1417 times since January 2019
Visitors: 1420