View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0128_low_1 (Length: 480)
Name: NF0128_low_1
Description: NF0128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0128_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 53 - 472
Target Start/End: Complemental strand, 45349697 - 45349283
Alignment:
| Q |
53 |
ttatctctctgtgttttcctgtaatgtaattgatttatctctgtttcgtaactttcagtagcaaaaaactcgtataccatataatcgtac--tatcagat |
150 |
Q |
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| T |
45349697 |
ttatctctctgtgttttcctgtaatgtaattgatttatctctgtttcgtaactttcagtagcaaaaaactcgtataccatataatcgtactatatcagac |
45349598 |
T |
|
| Q |
151 |
gagcatttcaataggtgcagtccaccaaaccaacaataatcataaaatgttcattgctcctctnnnnnnntataaaattgtcattggtttttaggttcat |
250 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
45349597 |
gagcatttcaataggtgcagtccaccaaaccaacaataatcataaaatgttcattgctcctctaaaaaaatataaaattgtcattgctttttaggttcat |
45349498 |
T |
|
| Q |
251 |
gtgagtattttcacattcgatttacaagtgggatattattaattacacattgcatacttacaaaacaagtcacttaatactattgatattgcattttcaa |
350 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45349497 |
gtgagtattttcacattcgatttacaagtggga---tattaattacacattgcaaacatacaaaacaagtcacttaatactattgatattgcattttcaa |
45349401 |
T |
|
| Q |
351 |
atcaatatatagctcctactcatgagtgtggtttcgaagaacnnnnnnntgaaaacccaataaccttcttaaagcttctacaagtacaattatcaatgtt |
450 |
Q |
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|||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45349400 |
atca----atagctcctactcatgagtgtggtttcgaagaacaaaaaaatgaaaaccccataaccttcttaaagcttctacaagtacaattatcaatgtt |
45349305 |
T |
|
| Q |
451 |
ataatcttcttcaatattgttc |
472 |
Q |
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|||||||||||||||||||||| |
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| T |
45349304 |
ataatcttcttcaatattgttc |
45349283 |
T |
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