View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0130Ase10 (Length: 881)

Name: NF0130Ase10
Description: NF0130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0130Ase10
NF0130Ase10
[»] chr3 (1 HSPs)
chr3 (9-866)||(31131276-31132134)


Alignment Details
Target: chr3 (Bit Score: 684; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 684; E-Value: 0
Query Start/End: Original strand, 9 - 866
Target Start/End: Original strand, 31131276 - 31132134
Alignment:
Q  9 atttgatttagctacaacttctgaagtagaaattgacgaggttganttagatccactgaaacttgtagttctanactctacacttgaatcagtancacaa 108  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  31131276 atttgatttagcttcaacttctgaagtagaaattgacgaggttgaattagatccactgaaacttgtagttctagactctacacttgaatcagtaacacaa 31131375  T
Q  109 gaagaacgagacccatcttttttcttttgagaatttttagataangtttccatctttgaggtaagaaaagtttttgaaatggaaaaggtgaaatgggtct 208  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31131376 gaagaacgagacccatcttttttcttttgagaatttttagataaagtttccatctttgaggtaagaaaagtttttgaaatggaaaaggtgaaatgggtct 31131475  T
Q  209 gttagaactccacgggnnnnnnngaatancntgggttgagacaagtttgaaaaaatataggatgttggttttaactgtttaaggatgtttgaaagggggt 308  Q
    |||||||||| |||||       ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31131476 gttagaactcaacgggaaaaaaagaataacatgggttgagacaagtttgaaaaaatataggatgttggttttaactgtttaaggatgtttgaaagggggt 31131575  T
Q  309 tgttttgtgangnnnaagacgtgtggctttttaggaaaaggaatgtgagatgagaatgagattcttctttgngcagagagacacactcactcactcacat 408  Q
    |||||||||| |   |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31131576 tgttttgtgatgatgaagacgtgtggctttttaggaaaaggaatgtgagatgagaatgagattcttctttgtgcagagagacacactcactcactcacat 31131675  T
Q  409 acacagtctctatctcatttgatttcattttcaaagtttgaaaaaatggtccaaatgcttataacgtctctatggcttttggctctcacactactcgcag 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31131676 acacagtctctatctcatttgatttcattttcaaagtttgaaaaaatggtccaaatgcttataacgtctctatggcttttggctctcacactacttgcag 31131775  T
Q  509 gtgtgttcaaaaatttatgtcaataaagtaaaatacaaaagaatttgaacattgtatatagtggagagaagttcagctatngaaattacttttttatcct 608  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||    
T  31131776 gtgtgttcaaaaatttatgtcaataaaataaaatacaaaagaatttgaacattgcatatagtggagagaagttgagctattgaaattacttttttatcct 31131875  T
Q  609 tttctttcgttgacattgctatgaatcggatnttctttgcaattacagaaactaatctctcagttgggtaganccataataggagcaaanctttcatgag 708  Q
    || ||||| |||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||    
T  31131876 ttactttcattgacattgctatgaatcggattttttctgcaattacagaaactaatctctcagttgggtagaactataataggagcaaaactttcatgag 31131975  T
Q  709 attgangcatgntaaatannacttctnggataacaaaatataagcaaaaatatctctaaaagacaaaa--ttgtttaaattttagatcaaatatgttatt 806  Q
    ||||  ||||  ||||||  ||||||  ||||||||||||||||  ||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  31131976 attggtgcatattaaatattacttctttgataacaaaatataagtgaaaatatctctaaaagacaaaaatttgtttaaattttagatcaaatatgttatt 31132075  T
Q  807 tntnaaanttgtttgtntatattttgttacatatggagtattattatccagtgcatccca 866  Q
    | | ||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  31132076 tttaaaatttgtttgtttatattttgttacatatggagtattattatcca-tgcatccca 31132134  T

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