View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0130Ase12 (Length: 522)
Name: NF0130Ase12
Description: NF0130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0130Ase12 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 110 - 516
Target Start/End: Complemental strand, 2504002 - 2503595
Alignment:
| Q |
110 |
tgcatttcaatctgacnagtggggcaagaaantgatgctaaanaaaaagngngntgnttttaaatttgcaagggctanagaantgaatngctacatgntt |
209 |
Q |
| |
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|||||||||||||||| ||||| |||||||| |||||||||| |||| | | | || |||||||||||||||| ||| |||| ||||| |||||||| || |
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| T |
2504002 |
tgcatttcaatctgacaagtggtgcaagaaactgatgctaaaaaaaatgtgtggtgattttaaatttgcaaggtctagagaaatgaattgctacatgttt |
2503903 |
T |
|
| Q |
210 |
aagagca-gatatagcaacctatgagtcaaaaagnagcacaatatgaancaagtttaaattaactaacagangcnagagagtcnnaccatctagcaatac |
308 |
Q |
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||||||| |||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||| || |||||||| ||||||||||||||| |
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| T |
2503902 |
aagagcatgatacagcaacctatgagtcaaaaagtagcacaatatgaaacaagtttaaattaaccaacagatgcaagagagtcaaaccatctagcaatac |
2503803 |
T |
|
| Q |
309 |
tagaaactagcatttcccgaaggttaattaacattgaaagaaanccctcttaaacaataagacaaaaaggattctaanntctaagaaaatgaatcttcta |
408 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2503802 |
tagaaactagcatttcaagaaggttaattaacattgaaagaaaaccctcttaaacaataagacaaaaaggattctaaaatctaagaaaatgaatcttcta |
2503703 |
T |
|
| Q |
409 |
ttcctatctttgttgnctcgttccataattaaactcaaccaaactcatattgtcctaggtagagatgcaactcaacggtactatgagttgtatatacttt |
508 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2503702 |
ttcctatctttgttgtctcgttccataattaaactcaaccaaactcatattgtcctaggtagagatacaactcaacggtactatgagttgtatatacttt |
2503603 |
T |
|
| Q |
509 |
aattatta |
516 |
Q |
| |
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|||||||| |
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| T |
2503602 |
aattatta |
2503595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 236 - 508
Target Start/End: Original strand, 2650294 - 2650565
Alignment:
| Q |
236 |
caaaaagnagcacaatatgaancaagtttaaattaactaacagangcnagagagtcnnaccatctagcaatactagaaactagcatttcccgaaggttaa |
335 |
Q |
| |
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||||||| |||| ||||||| ||||||||||||||| |||| | || |||||||| ||||| ||||||||||||||||||||||| ||||||||| |
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| T |
2650294 |
caaaaagtagcatgatatgaaacaagtttaaattaaccaacatatgcaagagagtcaaaccatt--gcaatactagaaactagcatttctagaaggttaa |
2650391 |
T |
|
| Q |
336 |
ttaacattgaaagaaanccctcttaaacaataagacaaaaaggattctaanntctaagaaaatgaatcttctattcctatctttgttgnctcgttcc--a |
433 |
Q |
| |
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||| ||||||||||| || | ||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||| | |
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| T |
2650392 |
ctaatattgaaagaaaacc-tgttaaacaataagaaaaaaaggattctaaaatctaagaaaatgaatcttctactcctatctttgttgtctcgttccata |
2650490 |
T |
|
| Q |
434 |
taattaaactcaaccaaactcatattgtcctaggtagagatgcaactcaacggtactatgagttgtatatacttt |
508 |
Q |
| |
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||||||||| |||||||||||||||||||||| | | | |||||||||||| ||||||||||| ||||||||||| |
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| T |
2650491 |
taattaaacccaaccaaactcatattgtcctaagcaaacatgcaactcaactgtactatgagtcgtatatacttt |
2650565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 363 - 494
Target Start/End: Original strand, 7332441 - 7332572
Alignment:
| Q |
363 |
caataagacaaaaaggattctaanntctaagaaaatgaatcttctattcctatctttgttgnctcgttccataattaaactcaaccaaactcatattgtc |
462 |
Q |
| |
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|||||||| ||||||||||| || |||| |||||||||||||||| |||||||||||| ||||||||||| |||||||||||| ||||||||||||| |
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| T |
7332441 |
caataagaaaaaaaggattcgaaaatctacgaaaatgaatcttctactcctatctttgtcttctcgttccatagttaaactcaacccaactcatattgtc |
7332540 |
T |
|
| Q |
463 |
ctaggtagagatgcaactcaacggtactatga |
494 |
Q |
| |
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||| ||||||||||||||| || ||||||||| |
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| T |
7332541 |
ctaagtagagatgcaactcgactgtactatga |
7332572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 10 - 112
Target Start/End: Complemental strand, 2504153 - 2504051
Alignment:
| Q |
10 |
cacatnttgagaggaacttcgctacaatctcagagactcagacactatatcantaatatattgacgccattttaccanttttatgaattgtacaatgtgc |
109 |
Q |
| |
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||||| |||| |||||||||||||||||||||||||||| |||||||||||| ||||||||| | |||||||||||| |||||||||||||||||||||| |
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| T |
2504153 |
cacatattgaaaggaacttcgctacaatctcagagactccgacactatatcaataatatattcaggccattttaccaattttatgaattgtacaatgtgc |
2504054 |
T |
|
| Q |
110 |
tgc |
112 |
Q |
| |
|
||| |
|
|
| T |
2504053 |
tgc |
2504051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 437
Target Start/End: Complemental strand, 2494436 - 2494294
Alignment:
| Q |
296 |
catctagcaatactagaaactagcatttcccgaaggttaattaacattgaaagaaanccctct-taaacaataagacaaaaaggattctaanntctaaga |
394 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||| ||||||||||| || | | ||||||| | | |||||||| ||||| ||||||| |
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| T |
2494436 |
catctagcaatactagaaactaccattgatagaaggttaattaatattgaaagaaaaccttgtaaaaacaattata-aaaaaggactctaaaatctaaga |
2494338 |
T |
|
| Q |
395 |
aaa-tgaatcttctattcctatctttgttgnctcgttccataat |
437 |
Q |
| |
|
||| ||||||| |||||||||||| || ||||||||||||| |
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| T |
2494337 |
aaagtgaatctattattcctatcttgtgtgcctcgttccataat |
2494294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 114
Target Start/End: Original strand, 2641765 - 2641803
Alignment:
| Q |
76 |
ccattttaccanttttatgaattgtacaatgtgctgcat |
114 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
2641765 |
ccattttaccaatgttatgaattgtacaatgtgctgcat |
2641803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 114
Target Start/End: Original strand, 2649258 - 2649296
Alignment:
| Q |
76 |
ccattttaccanttttatgaattgtacaatgtgctgcat |
114 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||| |
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|
| T |
2649258 |
ccattttaccaatgttatgaattgtacaatgtgctgcat |
2649296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 399
Target Start/End: Original strand, 7340030 - 7340176
Alignment:
| Q |
252 |
atgaancaagtttaaattaactaacagangcnagagagtcnnaccatctagcaatactagaaactagcatttc-ccgaaggttaattaacattgaaagaa |
350 |
Q |
| |
|
||||| |||||| || ||||| |||||| || |||||||| | |||||||||||||| ||||||||||| | ||||||| |||| |||||||||| |
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| T |
7340030 |
atgaaacaagttcaagttaaccaacagaggcaagagagtcaaatcatctagcaatact--aaactagcattgctaaaaaggttacttaatattgaaagaa |
7340127 |
T |
|
| Q |
351 |
anccctcttaaacaataagacaaaaaggattctaanntctaagaaaatg |
399 |
Q |
| |
|
| || | ||| ||| ||| ||||| ||||||| |||||||||||| |
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|
| T |
7340128 |
aaccaaataaaagaatgagaaaaaaattattctaaaatctaagaaaatg |
7340176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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