View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0130Ase13 (Length: 264)
Name: NF0130Ase13
Description: NF0130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0130Ase13 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 7 - 255
Target Start/End: Complemental strand, 39555919 - 39555665
Alignment:
| Q |
7 |
taatgataatagtaacantacaatgtagaattgaat----cnaaaacattgcgagaagtggaagattaagctgctcgtgcaaaagcatgagcactaccat |
102 |
Q |
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| T |
39555919 |
taatgataatagtaacaatataatgtggaattgaattaatcaaaaacaatgcgagaagcggaagattaagctgctcgtgcaaaagcatgagcgctaccat |
39555820 |
T |
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| Q |
103 |
ttgtttgacgccccgtaaacataactttgtaattattgtgatgtgagaagagagattt--aatatttcangatcacatcatccttgtttttattgacatc |
200 |
Q |
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| T |
39555819 |
ttgcttgacgccccgtaaacataactttgtaattattgtgatgtgagaagagatatttacaatatttcaagatcacatcatccttgtttttattgacatc |
39555720 |
T |
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| Q |
201 |
ttcaacgaccgatttacaatccatttccaatatgangttgtggngttccaacgta |
255 |
Q |
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| T |
39555719 |
atcaacgatcgatttacaatccatttccaatatgacgttgtggtgttccaacgta |
39555665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 19528518 - 19528450
Alignment:
| Q |
183 |
cttgtttttattgacatcttcaacgaccgatttacaatccatttccaatatgangttgtggngttccaa |
251 |
Q |
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| T |
19528518 |
cttgttgttattgatatcatcaacgaccagtttgcaatccgtttccaatatgacgttgtagtgttccaa |
19528450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 156
Target Start/End: Original strand, 22944319 - 22944450
Alignment:
| Q |
25 |
tacaatgtagaattgaatcnaaaacattgcgagaagtggaagattaagctgctcgtgcaaaagcatgagcactaccatttgtttgacgccccgtaaacat |
124 |
Q |
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| T |
22944319 |
tacaacgttgaattaaataaaaaatattgcaagaagcgtaagataaagccgcccttgtaagagcataagtactaccatttgcttgacgtttggtaaacac |
22944418 |
T |
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| Q |
125 |
aactttgtaattattgtgatgtgagaagagag |
156 |
Q |
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| T |
22944419 |
aattttgtaattattgtgacgtgagaggagag |
22944450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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