View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0130Ase16 (Length: 634)

Name: NF0130Ase16
Description: NF0130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0130Ase16
NF0130Ase16
[»] chr4 (5 HSPs)
chr4 (98-602)||(33086622-33087125)
chr4 (7-54)||(33086531-33086578)
chr4 (364-402)||(45195796-45195834)
chr4 (369-406)||(41858213-41858250)
chr4 (370-402)||(26988986-26989018)
[»] chr7 (1 HSPs)
chr7 (364-402)||(35356410-35356448)
[»] chr5 (2 HSPs)
chr5 (364-406)||(32075869-32075911)
chr5 (362-402)||(27549737-27549777)
[»] chr3 (1 HSPs)
chr3 (330-402)||(30670883-30670958)
[»] chr2 (2 HSPs)
chr2 (364-402)||(37267745-37267783)
chr2 (362-402)||(19572598-19572638)
[»] chr1 (1 HSPs)
chr1 (364-402)||(48400946-48400984)
[»] chr8 (1 HSPs)
chr8 (362-402)||(37325114-37325154)


Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 98 - 602
Target Start/End: Original strand, 33086622 - 33087125
Alignment:
Q  98 taaggcaaagtttctattcaactttcgttcttcttttgtttatattgttctc--tgattttgattgtcntttgccagcttgataagaaaactcaataaaa 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||    
T  33086622 taaggcaaagtttctattcaactttcgttcttcttttgtttatattgttctctctgattttgattgtcatttgccagcttgataagaaaactcaataaaa 33086721  T
Q  196 ctggaccaatcaaaatcaatgttgacattgatgcngnaatattccataggtccaatgaatggaaatggaaaggcatcncttgatgggcatctgtttattt 295  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||    
T  33086722 ctggaccaatcaaaatcaatgttgacattgatgcagtaatattccataggtccaataaatggaaatggaaaggcatcacttgattggcatctgtttattt 33086821  T
Q  296 gncaatccttgangtgcatgtttctcancangcttattacttttctcctccnatgagtttctcccgcatatttggattctaaaattcgaaatgttttaac 395  Q
    | |||||||||| |||||||||||||| || |||||||||||||||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||    
T  33086822 gtcaatccttgatgtgcatgtttctcaacaagcttattacttttctcctcctatgagtttctcgcgcatattcggattttaaaattcgaaatgttttaac 33086921  T
Q  396 gtgttttagagnnnnnnnatnnnnnnnttttgtcattcgaattatataatccgaacaaaatagagagtgcgagaaataaatanggnggaaaaagaaggag 495  Q
    |||||||||||       ||       ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||| ||    
T  33086922 gtgttttagag-ccttttatggggtgtttttgtcattcgaattatataatccgaacaaaatagagaatgcgagaaataaataaggtggaaaaagaagaag 33087020  T
Q  496 tctctcaacaatacacgcacaacataagataggntggatttttaccacncataagactcntgangtgngtatganntgggatatagngacnaangatatg 595  Q
    |||||||||||||||  |||||||||||||| | |||||||||||||| |||||||||| ||| ||| ||||||  |||||||||| ||| || ||||||    
T  33087021 tctctcaacaataca--cacaacataagataagttggatttttaccacacataagactcatgaagtgtgtatgaattgggatatagtgacaaatgatatg 33087118  T
Q  596 gagaaaa 602  Q
    |||||||    
T  33087119 gagaaaa 33087125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 33086531 - 33086578
Alignment:
Q  7 atatctaagctagattttaaaatnngaaaagtaatttgaacaagccct 54  Q
    |||||||| ||||||||||||||  |||||||||||||||||||||||    
T  33086531 atatctaaactagattttaaaataagaaaagtaatttgaacaagccct 33086578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 364 - 402
Target Start/End: Complemental strand, 45195834 - 45195796
Alignment:
Q  364 tatttggattctaaaattcgaaatgttttaacgtgtttt 402  Q
    |||||| ||||||||||||||||||||||||||| ||||    
T  45195834 tatttgaattctaaaattcgaaatgttttaacgtatttt 45195796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 406
Target Start/End: Complemental strand, 41858250 - 41858213
Alignment:
Q  369 ggattctaaaattcgaaatgttttaacgtgttttagag 406  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  41858250 ggattctaaaattcgaaatctttcaacgtgttttagag 41858213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 370 - 402
Target Start/End: Complemental strand, 26989018 - 26988986
Alignment:
Q  370 gattctaaaattcgaaatgttttaacgtgtttt 402  Q
    ||||||||||| |||||||||||||||||||||    
T  26989018 gattctaaaatccgaaatgttttaacgtgtttt 26988986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 364 - 402
Target Start/End: Complemental strand, 35356448 - 35356410
Alignment:
Q  364 tatttggattctaaaattcgaaatgttttaacgtgtttt 402  Q
    |||||| |||||||||| |||||||||||||||||||||    
T  35356448 tatttgaattctaaaatccgaaatgttttaacgtgtttt 35356410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 364 - 406
Target Start/End: Original strand, 32075869 - 32075911
Alignment:
Q  364 tatttggattctaaaattcgaaatgttttaacgtgttttagag 406  Q
    |||| |||||||||||| | |||||||||||||||||||||||    
T  32075869 tattcggattctaaaatccaaaatgttttaacgtgttttagag 32075911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 362 - 402
Target Start/End: Complemental strand, 27549777 - 27549737
Alignment:
Q  362 catatttggattctaaaattcgaaatgttttaacgtgtttt 402  Q
    ||||||| |||||||||||| ||||||||| ||||||||||    
T  27549777 catatttagattctaaaatttgaaatgtttcaacgtgtttt 27549737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 330 - 402
Target Start/End: Complemental strand, 30670958 - 30670883
Alignment:
Q  330 tattacttttctcctccnatgagtttctcccgcat---atttggattctaaaattcgaaatgttttaacgtgtttt 402  Q
    ||||||||||||| | | ||||||||||| |||||   ||| ||||||||||||  |||||||||||| |||||||    
T  30670958 tattacttttctcatactatgagtttctcgcgcatcttattcggattctaaaatctgaaatgttttaatgtgtttt 30670883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 364 - 402
Target Start/End: Original strand, 37267745 - 37267783
Alignment:
Q  364 tatttggattctaaaattcgaaatgttttaacgtgtttt 402  Q
    ||||||||||||||||| |||||| ||||||||||||||    
T  37267745 tatttggattctaaaatccgaaatattttaacgtgtttt 37267783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 362 - 402
Target Start/End: Original strand, 19572598 - 19572638
Alignment:
Q  362 catatttggattctaaaattcgaaatgttttaacgtgtttt 402  Q
    |||||||||||| ||||||  ||||||||||||||||||||    
T  19572598 catatttggattttaaaatctgaaatgttttaacgtgtttt 19572638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 364 - 402
Target Start/End: Original strand, 48400946 - 48400984
Alignment:
Q  364 tatttggattctaaaattcgaaatgttttaacgtgtttt 402  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  48400946 tattcggattctaaaatccgaaatgttttaacgtgtttt 48400984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 362 - 402
Target Start/End: Original strand, 37325114 - 37325154
Alignment:
Q  362 catatttggattctaaaattcgaaatgttttaacgtgtttt 402  Q
    |||||||  ||| ||||||||||||||||||||||||||||    
T  37325114 catatttaaattttaaaattcgaaatgttttaacgtgtttt 37325154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1727 times since January 2019
Visitors: 1426