View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0130Ase2 (Length: 628)
Name: NF0130Ase2
Description: NF0130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0130Ase2 |
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Alignment Details
Target: chr2 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 8 - 613
Target Start/End: Complemental strand, 2802788 - 2802184
Alignment:
| Q |
8 |
gaatagtnatttcttccngnncaattcaaatcactttatcagcacagaaagcgaggcttctctttcttttttcnncattacagttaccatcttgagactt |
107 |
Q |
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| T |
2802788 |
gaatagttatttcttccagcacaattcaaatcactttatcagcacagaaagcgaggcttatctttcttttttcatcattacagttaccatcttgagactt |
2802689 |
T |
|
| Q |
108 |
tttgtctccatgnctttctcacgcnattcttgaaccatcanactaaatataacaattacnatacacagttagaacacacnagtctagggagagaaaaggg |
207 |
Q |
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| T |
2802688 |
tttgtctccatgtctttctcacactattcttgaaccatcaaactaaatataacaattacaatacaaagt-agaacacacaagtctagggagagaaaaggg |
2802590 |
T |
|
| Q |
208 |
aaaatggactttgatcttgacaaccctttatccagcttcaaagaacagcaaaactgtactatatcagaactctttgcctcagaaactgatcatatgccct |
307 |
Q |
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| T |
2802589 |
aaaatggactttgatcttgacaaccctttagccagcttcaaagaacagcaaaactgtactataacagaactctttgcctcagaaactgatcatatgccct |
2802490 |
T |
|
| Q |
308 |
caccaaacagcttgaactcaatacattgtgaagccatttctctcatacttcaggtaaaaattaggcctacataataaattttttcaattcctcttcnttc |
407 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
2802489 |
caccaaactgcttgaactcaatacattgtgaagccatttctctcatacttcaggtaaaaattaggcctacataatacattttttcaattcctcttctttc |
2802390 |
T |
|
| Q |
408 |
atttcacatatgctacattttatcatgtttcttcaggaccagcattcttgcaatttggatccatttatagcttatcttgctgtanattacttgcaccgtt |
507 |
Q |
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|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
2802389 |
atttcacatatgctacgttttatcatgtttcttcaggtccagcattcttgcaatttggatccatttatagcttatcttgctataaattacttgcaccgtt |
2802290 |
T |
|
| Q |
508 |
tcatgtcgaaacaagaatttccggtaagcacatatctanngattccactatatgcttatttctactncntagccaagngatgaaaactttgaacaattgc |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||| || |||||||||||||||||||||| |
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| T |
2802289 |
tcatgtcgaaacaagaatttccggtaagcacatatctaatgattccactatatgcttatttctacttcatagcaaaatgatgaaaactttgaacaattgc |
2802190 |
T |
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| Q |
608 |
ncatta |
613 |
Q |
| |
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||||| |
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| T |
2802189 |
acatta |
2802184 |
T |
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