View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0130Ase20 (Length: 348)
Name: NF0130Ase20
Description: NF0130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0130Ase20 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 8 - 342
Target Start/End: Original strand, 29516561 - 29516894
Alignment:
| Q |
8 |
gatacattangtacaataatacggnggcttatgtcatccatacccctctctccaaattacaacaaaagatgaatgcnctatacaaatcaactcctaataa |
107 |
Q |
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| T |
29516561 |
gatacattaagtacaataatacaaactcttatgtcatccatacccctctctccaaattacaacaaaagatgaatgcactatacaaatcaactcctaataa |
29516660 |
T |
|
| Q |
108 |
cacaattaaaattatcctatttaaataacttgtgacaaccttgtgttaaatcaatccncttttccatttaaataactctcataaaatatttaacaaatta |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
29516661 |
cacaattaaaattatcctatttaaataacttgtgacaaccttgtgtgaaatca-tccacttttccatttaaataactctcataaaatatttaacaaatta |
29516759 |
T |
|
| Q |
208 |
aagcttaaggagagttgagttattcatgttgtttgaaccaaaggtcgaacaagtttaagaaattaaaggatccggttcaaacaatagagaaggagaaaca |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29516760 |
aagcttaaggagagttgagttattcatgttgtttgaactaaaggtcgaacaagtttaagaaattaaaggatccggttcaaacaatagagaaggagaaaca |
29516859 |
T |
|
| Q |
308 |
taattaaagtttgagctatcaccaacacttaatta |
342 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
29516860 |
taattaaagtttgagctatcaccaacacttaatta |
29516894 |
T |
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